alignToUniverse         function to align a list of sets and a
                        reference universe
clusterPlot             Plots clusters of pathways with associated
                        directionality.
differentialPathwayAnalysis
                        Differential Expression Analysis For Pathways
enrichAllPairs          Pairwise enrichment analysis between two given
                        lists of sets
getDesignMatrix         Obtain Design Matrix
getDiffExpTable         function to get a DE table
getResidual             function to get residuals with respect to a set
                        of covariates
gscExample              Example genesets from MSigDB
jackKnifeBase           Outputs a table with col x (miRNA), probability
                        of observing k (depending on methodology)
                        against a random distribution with jack-knifing
                        of the pathway cluster (removing a pathway at a
                        time)
linColumnFinder         Function imported from
                        https://github.com/th1vairam/CovariateAnalysis
                        Modified from
                        http://stackoverflow.com/questions/13088770/
                        Function to find linearly dependednt columns of
                        a matrix
mappingPathwaysClusters
                        Outputs a table with pathways and their
                        respective clusters
methodProbBase          Outputs a table with col x, miRNA, probability
                        of observing k against a random distribution of
                        the cover of methodology
miRNAPathwayEnrichment
                        Enrichment Probability Of miRNAs
miniTestsPanomiR        Readouts and datasets for minimal reproducible
                        examples of the PanomiR.
msigdb_c2               Canonical pathways from Molecular Signatures
                        Database, MsigDb V6.2
path_gene_table         A table of gene-pathway association. based on
                        the pathways of MSigDB.
pathwayGeneTab          Pathway-Gene Associations
pathwaySummary          Pathway Summary Statistics
pcxnToNet               Creates a network out of pcxn table
prioritizeMicroRNA      Prioritize miRNA
reportEnrichment        Publication-ready miRNA-Pathway Enrichment
                        table
samplingDataBase        Outputs a table of sampling data(rows are miRNA
                        and cols are samples)
tableFromGSC            Pathway-Gene Associations from GeneSet
                        collections
targetScan_03           A processed list of miRNA target gene sets from
                        the TargetScan dataset. Each list item is a
                        list of genes targeted by the respective miRNA
                        family
