Package: packFinder
Type: Package
Title: de novo Annotation of Pack-TYPE Transposable Elements
Version: 1.0.0
Authors@R: c(person(given = "Jack", family = "Gisby", role = c("aut", "cre"), email = "jackgisby@gmail.com"), person(given = "Marco", family = "Catoni", role = "aut", email="m.catoni@bham.ac.uk"))
Description: Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).
License: GPL-2
Encoding: UTF-8
Depends: R (>= 4.0.0)
Imports: Biostrings, GenomicRanges, kmer, ape, methods, IRanges,
        S4Vectors
Suggests: biomartr, knitr, rmarkdown, testthat, dendextend, biocViews,
        BiocCheck, BiocStyle
RoxygenNote: 7.1.0
VignetteBuilder: knitr
URL: https://github.com/jackgisby/packFinder
BugReports: https://github.com/jackgisby/packFinder/issues
biocViews: Genetics, SequenceMatching, Annotation
git_url: https://git.bioconductor.org/packages/packFinder
git_branch: RELEASE_3_11
git_last_commit: d9d3786
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 04:37:06 UTC; biocbuild
Author: Jack Gisby [aut, cre],
  Marco Catoni [aut]
Maintainer: Jack Gisby <jackgisby@gmail.com>
Built: R 4.0.0; ; 2020-05-13 20:07:07 UTC; unix
