# Interspecies gene mapping

## Documentation for package ‘orthogene’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

orthogene-package | 'orthogene': Interspecies gene mapping
aggregate_mapped_genes | Aggregate/expand a gene matrix by gene mappings
all_genes | Get all genes
convert_orthologs | Map genes from one species to another
create_background | Create gene background
exp_mouse | Gene expression data: mouse
exp_mouse_enst | Transcript expression data: mouse
gprofiler_namespace | gconvert namespaces
gprofiler_orgs | Reference organisms
infer_species | Infer species from gene names
map_genes | Map genes
map_orthologs | Map orthologs
map_species | Standardise species names
orthogene | 'orthogene': Interspecies gene mapping
plot_orthotree | Create a phylogenetic tree of shared orthologs
prepare_tree | Prepare a phylogenetic tree
report_orthologs | Report orthologs