Package: orthogene
Type: Package
Title: Interspecies gene mapping
Version: 1.0.0
Authors@R: 
    c( 
     person(given = "Brian",
           family = "Schilder",
           role = c("cre"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191"))
    )      
Description: 
    orthogene is an R package for easy mapping of orthologous genes across hundreds of species. 
    It pulls up-to-date interspecies gene ortholog mappings across 700+ organisms.
    It also provides various utility functions to map common objects 
    (e.g. data.frames, gene expression matrices, lists) 
    onto 1:1 gene orthologs from any other species. 
URL: https://github.com/neurogenomics/orthogene
BugReports: https://github.com/neurogenomics/orthogene/issues
License: GPL-3
Depends: R (>= 4.1)
VignetteBuilder: knitr
biocViews: Genetics, ComparativeGenomics, Preprocessing, Phylogenetics,
        Transcriptomics, GeneExpression
Imports: dplyr, methods, stats, utils, Matrix, jsonlite, homologene,
        gprofiler2, babelgene, data.table, parallel, ggplot2, ggpubr,
        patchwork, DelayedArray, DelayedMatrixStats, Matrix.utils, grr,
        repmis, GenomeInfoDbData
Suggests: remotes, knitr, BiocStyle, covr, markdown, rmarkdown, here,
        testthat (>= 3.0.0), piggyback, badger
RoxygenNote: 7.1.2
Encoding: UTF-8
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/orthogene
git_branch: RELEASE_3_14
git_last_commit: 5b7b8b7
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-26 22:09:18 UTC; biocbuild
Author: Brian Schilder [cre] (<https://orcid.org/0000-0001-5949-2191>)
Maintainer: Brian Schilder <brian_schilder@alumni.brown.edu>
Built: R 4.1.1; ; 2021-11-07 20:35:23 UTC; unix
