# Identifying Genes Overexpressed in Subsets of Tumors from Tumor-Normal mRNA Expression Data

## Documentation for package ‘oncomix’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

exprNmlIsof | Human Breast Cancer RNA-sequencing data from TCGA - Adj. Normal Tissue
exprTumIsof | Human Breast Cancer RNA-sequencing data from TCGA - Tumor Tissue
mixModelParams | Generate the parameters for two 2-component Gaussian mixture models with equal variances
oncoMixBimodal | Creating a schematic of a 2-component mixture model
oncoMixIdeal | Creating an ideal oncomix gene
oncoMixTraditionalDE | Creating a schematic of a traditional diff. expression experiment
plotGeneHist | Plot a histogram of gene expression values from tumor and adjacent normal tissue.
queryRes | Oncogene Database Mapping Gene Symbol to UCSC ID (kgID)
scatterMixPlot | Generate a scatter plot with the output from mixModelParams
topGeneQuants | Identify genes that meet pre-specified quantiles