{% set version = "1.10.0" %}
{% set name = "oncomix" %}
{% set bioc = "3.11" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: f71653d0bd352f4d15b38c0a95234c9c
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: knitr, rmarkdown, testthat, RMySQL
requirements:
  host:
    - 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
    - r-base
    - r-ggplot2
    - r-ggrepel
    - r-mclust
    - r-rcolorbrewer
  run:
    - 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
    - r-base
    - r-ggplot2
    - r-ggrepel
    - r-mclust
    - r-rcolorbrewer
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: GPL-3
  summary: 'Identifying Genes Overexpressed in Subsets of Tumors from Tumor-Normal mRNA Expression Data'
  description: 'This package helps identify mRNAs that are overexpressed in subsets of tumors relative to normal tissue. Ideal inputs would be paired tumor-normal data from the same tissue from many patients (>15 pairs). This unsupervised approach relies on the observation that oncogenes are characteristically overexpressed in only a subset of tumors in the population, and may help identify oncogene candidates purely based on differences in mRNA expression between previously unknown subtypes.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

