Package: omicRexposome
Title: Exposome and omic data associatin and integration analysis
Version: 1.28.0
Authors@R: c(person("Carles", "Hernandez-Ferrer", , "carles.hernandez@isglobal.org", c("aut", "cre")),
    person("Juan R.", "González", ,"juanr.gonzalez@isglobal.org", role = "aut"))
Maintainer: Xavier Escribà Montagut <xavier.escriba@isglobal.org>
Description: omicRexposome systematizes the association evaluation between 
    exposures and omic data, taking advantage of MultiDataSet for coordinated 
    data management, rexposome for exposome data definition and limma for 
    association testing. Also to perform data integration mixing exposome and 
    omic data using multi co-inherent analysis (omicade4) and multi-canonical 
    correlation analysis (PMA).
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
VignetteBuilder: knitr
Depends: R (>= 3.5.0), Biobase
Imports: stats, utils, grDevices, graphics, methods, rexposome, limma,
        sva, ggplot2, ggrepel, PMA, omicade4, gridExtra, MultiDataSet,
        SmartSVA, isva, parallel, SummarizedExperiment, stringr
Suggests: BiocStyle, knitr, rmarkdown, snpStats, brgedata
biocViews: ImmunoOncology, WorkflowStep, MultipleComparison,
        Visualization, GeneExpression, DifferentialExpression,
        DifferentialMethylation, GeneRegulation, Epigenetics,
        Proteomics, Transcriptomics, StatisticalMethod, Regression
git_url: https://git.bioconductor.org/packages/omicRexposome
git_branch: RELEASE_3_20
git_last_commit: 36221e2
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 02:08:04 UTC; biocbuild
Author: Carles Hernandez-Ferrer [aut, cre],
  Juan R. González [aut]
Built: R 4.4.2; ; 2025-01-01 01:06:52 UTC; unix
