# Generation of null ranges via bootstrapping or covariate matching

## Documentation for package ‘nullranges’ version 1.6.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

BootRanges | BootRanges object
bootRanges | Block bootstrap for genomic ranges
BootRanges-class | BootRanges object
combnCov | Function for creating combinations of covariates
combnCov-method | Function for creating combinations of covariates
covariates | Get covariates from a Matched object
covariates-method | Get covariates from a Matched object
focal | Get focal set from a Matched object
focal-method | Get focal set from a Matched object
indices | Get indices of matched set
indices-method | Get indices of matched set
makeExampleMatchedDataSet | Function for generating an example matchRanges or Matched dataset
makeExampleMatchedDataSet-method | Function for generating an example matchRanges or Matched dataset
Matched | Matched objects
matched | Get matched set from a Matched object
Matched-class | Matched objects
matched-method | Get matched set from a Matched object
matchedData | Get matched data from a Matched object
matchedData-method | Get matched data from a Matched object
MatchedDataFrame | MatchedDataFrame objects
MatchedDataFrame-class | MatchedDataFrame objects
MatchedGInteractions | MatchedGInteractions objects
MatchedGInteractions-class | MatchedGInteractions objects
MatchedGRanges | MatchedGRanges objects
MatchedGRanges-class | MatchedGRanges objects
matchRanges | Generate a covariate-matched control set of ranges
matchRanges-method | Generate a covariate-matched control set of ranges
method | Get matching method used for Matched object
method-method | Get matching method used for Matched object
oneRegionSegment | Segmentation based on one region
overview | Overview of matching quality
overview-method | Overview of matching quality
plotCovariate | Covariate plotting for Matched objects
plotCovariate-method | Covariate plotting for Matched objects
plotPropensity | Propensity score plotting for Matched objects
plotPropensity-method | Propensity score plotting for Matched objects
plotSegment | Plot genome segmentation
pool | Get pool set from a Matched object
pool-method | Get pool set from a Matched object
reduceSegment | Combine nearby regions with same state
segmentDensity | Genome segmentation based on feature density
unmatched | Get unmatched set from a Matched object
unmatched-method | Get unmatched set from a Matched object
withReplacement | Get replace method
withReplacement-method | Get replace method