Package: NormalyzerDE
Title: Evaluation of normalization methods and calculation of
        differential expression analysis statistics
Version: 1.4.0
Maintainer: Jakob Willforss <jakob.willforss@immun.lth.se>
Author: Jakob Willforss
Authors@R: c(
    person("Jakob", "Willforss", email="jakob.willforss@immun.lth.se", role=c("aut", "cre")),
    person("Aakash", "Chawade", role="aut"),
    person("Fredrik", "Levander", role=c("aut", "ths")))
Description: NormalyzerDE provides screening of normalization methods for 
    LC-MS based expression data. It calculates a range of normalized matrices 
    using both existing approaches and a novel time-segmented approach, 
    calculates performance measures and generates an evaluation report. 
    Furthermore, it provides an easy utility for Limma- or ANOVA- based 
    differential expression analysis.
Imports: vsn, preprocessCore, limma, MASS, ape, car, ggplot2, methods,
        Biobase, RcmdrMisc, raster, utils, stats, SummarizedExperiment,
        matrixStats, ggforce
Suggests: knitr, testthat, rmarkdown, roxygen2, hexbin, BiocStyle
VignetteBuilder: knitr
biocViews: Normalization, MultipleComparison, Visualization, Bayesian,
        Proteomics, Metabolomics, DifferentialExpression
License: Artistic-2.0
Encoding: UTF-8
RoxygenNote: 6.1.1
URL: https://github.com/ComputationalProteomics/NormalyzerDE
Depends: R (>= 3.6)
git_url: https://git.bioconductor.org/packages/NormalyzerDE
git_branch: RELEASE_3_10
git_last_commit: 96750a1
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
NeedsCompilation: no
Packaged: 2019-10-30 03:16:42 UTC; biocbuild
Built: R 3.6.1; ; 2019-11-02 22:46:09 UTC; unix
