Package: nnSVG
Version: 1.4.1
Title: Scalable identification of spatially variable genes in
        spatially-resolved transcriptomics data
Description: Method for scalable identification of spatially variable genes 
    (SVGs) in spatially-resolved transcriptomics data. The method is based on 
    nearest-neighbor Gaussian processes and uses the BRISC algorithm for model 
    fitting and parameter estimation. Allows identification and ranking of SVGs 
    with flexible length scales across a tissue slide or within spatial domains 
    defined by covariates. Scales linearly with the number of spatial locations 
    and can be applied to datasets containing thousands or more spatial 
    locations.
Authors@R: c(
    person("Lukas M.", "Weber", 
           email = "lukas.weber.edu@gmail.com", 
           role = c("aut", "cre"), 
           comment = c(ORCID = "0000-0002-3282-1730")), 
    person("Stephanie C.", "Hicks", 
           email = "shicks19@jhu.edu", 
           role = c("aut"), 
           comment = c(ORCID = "0000-0002-7858-0231")))
URL: https://github.com/lmweber/nnSVG
BugReports: https://github.com/lmweber/nnSVG/issues
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: Spatial, SingleCell, Transcriptomics, GeneExpression,
        Preprocessing
Depends: R (>= 4.2)
Imports: SpatialExperiment, SingleCellExperiment, SummarizedExperiment,
        BRISC, BiocParallel, Matrix, matrixStats, stats, methods
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, STexampleData,
        WeberDivechaLCdata, scran, ggplot2, testthat
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/nnSVG
git_branch: RELEASE_3_17
git_last_commit: 7f895f3
git_last_commit_date: 2023-05-04
Date/Publication: 2023-05-05
NeedsCompilation: no
Packaged: 2023-05-05 22:01:15 UTC; biocbuild
Author: Lukas M. Weber [aut, cre] (<https://orcid.org/0000-0002-3282-1730>),
  Stephanie C. Hicks [aut] (<https://orcid.org/0000-0002-7858-0231>)
Maintainer: Lukas M. Weber <lukas.weber.edu@gmail.com>
Built: R 4.3.1; ; 2023-07-16 16:17:18 UTC; unix
