Package: netSmooth
Type: Package
Title: Network smoothing for scRNAseq
Version: 1.4.0
Authors@R: c(person("Jonathan", "Ronen", role = c("aut", "cre"),
                     email = "yablee@gmail.com"),
              person("Altuna", "Akalin", role = c("aut")))
Description: netSmooth is an R package for network smoothing of single cell RNA
    sequencing data. Using bio networks such as protein-protein interactions as
    priors for gene co-expression, netsmooth improves cell type identification
    from noisy, sparse scRNAseq data.
biocViews: Network, GraphAndNetwork, SingleCell, RNASeq,
        GeneExpression, Sequencing, Transcriptomics, Normalization,
        Preprocessing, Clustering, DimensionReduction
URL: https://github.com/BIMSBbioinfo/netSmooth
BugReports: https://github.com/BIMSBbioinfo/netSmooth/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5), scater (>= 1.9.20), clusterExperiment (>= 2.1.6)
Imports: entropy, SummarizedExperiment, SingleCellExperiment, Matrix,
        cluster, data.table, stats, methods, DelayedArray, HDF5Array
Suggests: knitr, testthat, Rtsne, biomaRt, igraph, STRINGdb, NMI,
        pheatmap, ggplot2, BiocStyle, rmarkdown, BiocParallel
VignetteBuilder: knitr
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/netSmooth
git_branch: RELEASE_3_9
git_last_commit: 679ff5e
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: no
Packaged: 2019-05-03 03:04:45 UTC; biocbuild
Author: Jonathan Ronen [aut, cre],
  Altuna Akalin [aut]
Maintainer: Jonathan Ronen <yablee@gmail.com>
Built: R 3.6.1; ; 2019-08-16 16:59:09 UTC; unix
