Package: NBSplice
Type: Package
Version: 1.15.0
Date: 2021-09-03
Title: Negative Binomial Models to detect Differential Splicing
Author: Gabriela A. Merino and Elmer A. Fernandez
Maintainer: Gabriela Merino <merino.gabriela33@gmail.com>
Description: The package proposes a differential splicing evaluation method
    based on isoform quantification. It applies generalized linear models with
    negative binomial distribution to infer changes in isoform relative
    expression. 
URL: http://www.bdmg.com.ar
License: GPL (>=2)
Depends: R (>= 3.5), methods
Imports: edgeR, stats, MASS, car, mppa, BiocParallel, ggplot2, reshape2
Suggests: knitr, RUnit, BiocGenerics, BiocStyle, rmarkdown, markdown
Collate: 'NBSplice-package.R' 'IsoDataSet.R' 'IsoDataSet-getters.R'
        'IsoDataSet-show.R' 'IsoDataSet-print.R'
        'IsoDataSet-buildLowExpIdx.R' 'IsoDataSet-core.R'
        'NBSpliceRes.R' 'NBSpliceRes-initialize.R'
        'NBSpliceRes-constructor.R' 'NBSpliceRes-getters.R'
        'NBSpliceRes-show.R' 'NBSpliceRes-print.R'
        'IsoDataSet-NBTest.R' 'totalGeneCounts.R'
        'IsoDataSet-initialize.R' 'IsoDataSet-constructor.R'
        'NBSpliceRes-getDSGenes.R' 'NBSpliceRes-getDSResults.R'
        'NBSpliceRes-getGeneResults.R' 'NBSpliceRes-plotRatiosDisp.R'
        'NBSpliceRes-plotVolcano.R' 'NBSpliceRes-plotGeneResults.R'
        'NBSplice-isoCounts.R' 'NBSplice-geneIso.R'
        'NBSplice-designMatrix.R' 'NBSplice-myIsoDataSet.R'
        'NBSplice-myDSResults.R'
biocViews: Software, StatisticalMethod, AlternativeSplicing,
        Regression, DifferentialExpression, DifferentialSplicing,
        RNASeq, ImmunoOncology
VignetteBuilder: knitr
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/NBSplice
git_branch: master
git_last_commit: 06141d9
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
NeedsCompilation: no
Packaged: 2022-04-26 21:05:22 UTC; biocbuild
Built: R 4.2.1; ; 2022-11-03 13:58:04 UTC; unix
