lib/R/library/MutationalPatterns/CITATION
lib/R/library/MutationalPatterns/DESCRIPTION
lib/R/library/MutationalPatterns/INDEX
lib/R/library/MutationalPatterns/LICENSE
lib/R/library/MutationalPatterns/Meta/Rd.rds
lib/R/library/MutationalPatterns/Meta/features.rds
lib/R/library/MutationalPatterns/Meta/hsearch.rds
lib/R/library/MutationalPatterns/Meta/links.rds
lib/R/library/MutationalPatterns/Meta/nsInfo.rds
lib/R/library/MutationalPatterns/Meta/package.rds
lib/R/library/MutationalPatterns/Meta/vignette.rds
lib/R/library/MutationalPatterns/NAMESPACE
lib/R/library/MutationalPatterns/NEWS
lib/R/library/MutationalPatterns/R/MutationalPatterns
lib/R/library/MutationalPatterns/R/MutationalPatterns.rdb
lib/R/library/MutationalPatterns/R/MutationalPatterns.rdx
lib/R/library/MutationalPatterns/doc/Introduction_to_MutationalPatterns.R
lib/R/library/MutationalPatterns/doc/Introduction_to_MutationalPatterns.Rmd
lib/R/library/MutationalPatterns/doc/Introduction_to_MutationalPatterns.html
lib/R/library/MutationalPatterns/doc/index.html
lib/R/library/MutationalPatterns/extdata/ReplicationDirectionRegions.bed
lib/R/library/MutationalPatterns/extdata/blood-AC.vcf
lib/R/library/MutationalPatterns/extdata/blood-ACC55.vcf
lib/R/library/MutationalPatterns/extdata/blood-BCH.vcf
lib/R/library/MutationalPatterns/extdata/callableloci-sample.bed
lib/R/library/MutationalPatterns/extdata/colon1-sample.vcf
lib/R/library/MutationalPatterns/extdata/colon2-sample.vcf
lib/R/library/MutationalPatterns/extdata/colon3-sample.vcf
lib/R/library/MutationalPatterns/extdata/empty.vcf
lib/R/library/MutationalPatterns/extdata/intestine1-sample.vcf
lib/R/library/MutationalPatterns/extdata/intestine2-sample.vcf
lib/R/library/MutationalPatterns/extdata/intestine3-sample.vcf
lib/R/library/MutationalPatterns/extdata/liver1-sample.vcf
lib/R/library/MutationalPatterns/extdata/liver2-sample.vcf
lib/R/library/MutationalPatterns/extdata/liver3-sample.vcf
lib/R/library/MutationalPatterns/extdata/signatures/SIGNAL_conversion_matrix.txt
lib/R/library/MutationalPatterns/extdata/signatures/dbs_COSMIC_reference.txt
lib/R/library/MutationalPatterns/extdata/signatures/dbs_SIGNAL_exposure.txt
lib/R/library/MutationalPatterns/extdata/signatures/indel_COSMIC_reference.txt
lib/R/library/MutationalPatterns/extdata/signatures/snv_COSMIC_reference.txt
lib/R/library/MutationalPatterns/extdata/signatures/snv_SIGNAL_exposure.txt
lib/R/library/MutationalPatterns/extdata/signatures/snv_SIGNAL_reference.txt
lib/R/library/MutationalPatterns/extdata/signatures/snv_SIGNAL_tissue.txt
lib/R/library/MutationalPatterns/extdata/signatures/snv_SPARSE_reference.txt
lib/R/library/MutationalPatterns/extdata/signatures/tsb_snv_COSMIC_reference.txt
lib/R/library/MutationalPatterns/help/AnIndex
lib/R/library/MutationalPatterns/help/MutationalPatterns.rdb
lib/R/library/MutationalPatterns/help/MutationalPatterns.rdx
lib/R/library/MutationalPatterns/help/aliases.rds
lib/R/library/MutationalPatterns/help/paths.rds
lib/R/library/MutationalPatterns/html/00Index.html
lib/R/library/MutationalPatterns/html/R.css
lib/R/library/MutationalPatterns/scripts/Format_signatures.R
lib/R/library/MutationalPatterns/scripts/create_example_dbs.R
lib/R/library/MutationalPatterns/scripts/create_example_indels.R
lib/R/library/MutationalPatterns/scripts/create_example_mbs.R
lib/R/library/MutationalPatterns/scripts/create_example_regulatory_regions.R
lib/R/library/MutationalPatterns/scripts/create_example_snvs.R
lib/R/library/MutationalPatterns/scripts/create_example_vcfs.R
lib/R/library/MutationalPatterns/states/CTCF_g_data.rds
lib/R/library/MutationalPatterns/states/blood_dbs_counts.rds
lib/R/library/MutationalPatterns/states/blood_grl.rds
lib/R/library/MutationalPatterns/states/blood_grl_dbs.rds
lib/R/library/MutationalPatterns/states/blood_grl_dbs_context.rds
lib/R/library/MutationalPatterns/states/blood_grl_indel.rds
lib/R/library/MutationalPatterns/states/blood_grl_indel_context.rds
lib/R/library/MutationalPatterns/states/blood_grl_mbs.rds
lib/R/library/MutationalPatterns/states/blood_indel_counts.rds
lib/R/library/MutationalPatterns/states/blood_indels_counts_split_region.rds
lib/R/library/MutationalPatterns/states/blood_indels_longmatrix_split_region.rds
lib/R/library/MutationalPatterns/states/blood_mbs_counts.rds
lib/R/library/MutationalPatterns/states/blosum62.rds
lib/R/library/MutationalPatterns/states/bootstrapped_snv_refit.rds
lib/R/library/MutationalPatterns/states/context_mismatches.rds
lib/R/library/MutationalPatterns/states/dbs_refit.rds
lib/R/library/MutationalPatterns/states/distr_data.rds
lib/R/library/MutationalPatterns/states/grl_split_region.rds
lib/R/library/MutationalPatterns/states/indel_refit.rds
lib/R/library/MutationalPatterns/states/lesion_segregation.rds
lib/R/library/MutationalPatterns/states/mut_mat_data.rds
lib/R/library/MutationalPatterns/states/mut_mat_data_extended.rds
lib/R/library/MutationalPatterns/states/mut_mat_longregions.rds
lib/R/library/MutationalPatterns/states/mut_mat_repli.rds
lib/R/library/MutationalPatterns/states/mut_mat_s_data.rds
lib/R/library/MutationalPatterns/states/mut_mat_splitregions.rds
lib/R/library/MutationalPatterns/states/nmf_res_data.rds
lib/R/library/MutationalPatterns/states/nmf_res_strand_data.rds
lib/R/library/MutationalPatterns/states/promoter_flanking_g_data.rds
lib/R/library/MutationalPatterns/states/promoter_g_data.rds
lib/R/library/MutationalPatterns/states/read_vcfs_as_granges_output.rds
lib/R/library/MutationalPatterns/states/regulatory_data.rds
lib/R/library/MutationalPatterns/states/repli_strand.rds
lib/R/library/MutationalPatterns/states/snv_refit.rds
lib/R/library/MutationalPatterns/states/strict_snv_refit.rds
