Package: muscat
Title: Multi-sample multi-group scRNA-seq data analysis tools
Description: `muscat` provides various methods and visualization tools 
    for DS analysis in multi-sample, multi-group, multi-(cell-)subpopulation 
    scRNA-seq data, including cell-level mixed models and methods based on 
    aggregated “pseudobulk” data, as well as a flexible simulation platform 
    that mimics both single and multi-sample scRNA-seq data.
Type: Package
Version: 1.0.0
Depends: R (>= 3.6), scater (>= 1.13)
Authors@R: c(
	person("Helena L.", "Crowell", role=c("aut", "cre"), 
		email="helena.crowell@uzh.ch"),
	person("Charlotte", "Soneson", role="aut"),
	person("Pierre-Luc", "Germain", role="aut"),
	person("Mark D.", "Robinson", role=c("aut", "fnd"), 
		email="mark.robinson@imls.uzh.ch"))
Imports: BiocParallel, blme, ComplexHeatmap, data.table, DESeq2,
        doParallel, dplyr, edgeR, ggplot2, glmmTMB, grDevices, grid,
        limma, lmerTest, lme4, magrittr, Matrix, matrixStats, methods,
        parallel, progress, purrr, reshape2, scales, sctransform,
        stats, SingleCellExperiment, SummarizedExperiment, S4Vectors,
        tibble, variancePartition, viridis
Suggests: BiocStyle, cowplot, ExperimentHub, knitr, RColorBrewer,
        rmarkdown, testthat, UpSetR
biocViews: DifferentialExpression, Sequencing, SingleCell, Software,
        StatisticalMethod, Visualization
License: GPL (>= 2)
VignetteBuilder: knitr
RoxygenNote: 6.1.1
Encoding: UTF-8
LazyData: TRUE
git_url: https://git.bioconductor.org/packages/muscat
git_branch: RELEASE_3_10
git_last_commit: 9856b39
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
NeedsCompilation: no
Packaged: 2019-10-30 03:52:03 UTC; biocbuild
Author: Helena L. Crowell [aut, cre],
  Charlotte Soneson [aut],
  Pierre-Luc Germain [aut],
  Mark D. Robinson [aut, fnd]
Maintainer: Helena L. Crowell <helena.crowell@uzh.ch>
Built: R 3.6.1; ; 2019-11-03 23:11:34 UTC; unix
