Package: MungeSumstats
Type: Package
Title: Standardise summary statistics from GWAS
Version: 1.2.0
Authors@R: 
    c(person(given = "Alan",
           family = "Murphy",
           role = c("aut","cre"),
           email = "alanmurph94@hotmail.com",
           comment = c(ORCID = "0000-0002-2487-8753")),
     person(given = "Brian",
           family = "Schilder",
           role = c("aut","ctb"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191")),
    person(given = "Nathan",
           family = "Skene",
           role = c("aut"),
           email = "nathan.skene@gmail.com",
           comment = c(ORCID = "0000-0002-6807-3180"))) 
Description: 
  The *MungeSumstats* package is designed to facilitate the standardisation of 
  GWAS summary statistics. It reformats inputted summary statisitics to include 
  SNP, CHR, BP and can look up these values if any are missing. It also removes 
  duplicates across SNPs.
URL: https://github.com/neurogenomics/MungeSumstats
BugReports: https://github.com/neurogenomics/MungeSumstats/issues
License: Artistic-2.0
Depends: R(>= 4.1)
Imports: magrittr, data.table, utils, R.utils, dplyr, stats,
        GenomicRanges, GenomeInfoDb, BSgenome, Biostrings,
        VariantAnnotation, stringr, googleAuthR, httr, jsonlite,
        methods, parallel, rtracklayer, RCurl
biocViews: SNP, WholeGenome, Genetics, ComparativeGenomics,
        GenomeWideAssociation, GenomicVariation, Preprocessing
RoxygenNote: 7.1.2
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37,
        SNPlocs.Hsapiens.dbSNP144.GRCh38,
        BSgenome.Hsapiens.1000genomes.hs37d5,
        BSgenome.Hsapiens.NCBI.GRCh38, BiocGenerics, IRanges,
        S4Vectors, rmarkdown, markdown, knitr, testthat (>= 3.0.0),
        UpSetR, BiocStyle, covr, seqminer, Rsamtools, MatrixGenerics
Config/testthat/edition: 3
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/MungeSumstats
git_branch: RELEASE_3_14
git_last_commit: 27fb5d2
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-26 22:01:08 UTC; biocbuild
Author: Alan Murphy [aut, cre] (<https://orcid.org/0000-0002-2487-8753>),
  Brian Schilder [aut, ctb] (<https://orcid.org/0000-0001-5949-2191>),
  Nathan Skene [aut] (<https://orcid.org/0000-0002-6807-3180>)
Maintainer: Alan Murphy <alanmurph94@hotmail.com>
Built: R 4.1.1; ; 2021-11-09 19:51:12 UTC; unix
