# multiWGCNA

## Documentation for package ‘multiWGCNA’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bidirectionalBestMatches | Best matching modules
cleanDatExpr | cleanDatExpr
coexpressionLineGraph | Coexpression Line Graph
computeOverlapsFromWGCNA | computeOverlapsFromWGCNA
constructNetworks | constructNetworks: Construct all the weighted gene correlation networks
diffCoexpression | Differential co-expresison analysis
diffModuleExpression | Differential module expression
drawMultiWGCNAnetwork | Draw multiWGCNA network
GetDatExpr | Get expression data
getPreservation | getPreservation
iterate | iterate: Iterate function across networks
makeTraitTable | Generate a trait table from a sample table
moduleComparisonPlot | Module comparison plot
moduleExpressionPlot | Plots an expression profile for a module
moduleToModuleHeatmap | Module to module heatmap
name | name: Name of WGCNAobject
overlapComparisons | Overlap comparisons
performANOVA | Perform ANOVA
permutationTestResults | Permutation test results
preservationComparisonPlot | Preservation Comparison Scatterplot
preservationComparisons | Preservation comparisons
PreservationPermutationTest | PreservationPermutationTest
PreservationScoreDistribution | PreservationScoreDistribution
runDME | Run differential module expression
summarizeResults | summarizeResults: Summarize results from a results list object
TOMFlowPlot | TOMFlowPlot
topNGenes | topNGenes: Top N genes of a module
WGCNA-class | The WGCNA Class