cyclic_loess	cyclic_loess
exportJuicebox	exportJuicebox
fastlo	fastlo
HCT116_r1	HCT116_r1
HCT116_r2	HCT116_r2
HCT116_r3	HCT116_r3
HCT116_r4	HCT116_r4
HCT116_r5	HCT116_r5
HCT116_r6	HCT116_r6
hg19_cyto	hg19_cyto
hg38_cyto	hg38_cyto
Hicexp-class	Hicexp-class
hicexp2	hicexp2
hicexp_diff	hicexp_diff
hic_exactTest	hic_exactTest
hic_filter	hic_filter
hic_glm	hic_glm
hic_scale	hic_scale
hic_table	hic_table
hic_table,character,ANY-method	hic_table
hic_table,Hicexp-method	hic_table
make_hicexp	make_hicexp
manhattan_hicexp	manhattan_hicexp
MD_composite	MD_composite
MD_hicexp	MD_hicexp
meta	meta
meta,character,ANY-method	meta
meta,Hicexp-method	meta
normalized	normalized
normalized,character,ANY-method	normalized
normalized,Hicexp-method	normalized
perm_test	perm_test
plot_counts	plot_counts
plot_pvals	plot_pvals
pval_heatmap	pval_heatmap
resolution	resolution
resolution,character,ANY-method	resolution
resolution,Hicexp-method	resolution
results	results
results,character,ANY-method	results
results,Hicexp-method	results
show,character,ANY-method	show
show,Hicexp-method	show
smartApply	smartApply
topDirs	topDirs
