Package: msImpute
Type: Package
Title: Imputation of label-free mass spectrometry peptides
Version: 1.2.0
Authors@R: 
    person(given = "Soroor",
           family = "Hediyeh-zadeh",
           role = c("aut", "cre"),
           email = "hediyehzadeh.s@wehi.edu.au",
           comment = c(ORCID = "0000-0001-7513-6779"))
Description: MsImpute is a package for imputation of peptide intensity in proteomics experiments.
    It additionally contains tools for MAR/MNAR diagnosis and assessment of distortions to the probability 
    distribution of the data post imputation.  Currently, msImpute completes missing values by low-rank approximation of the underlying 
    data matrix.
Depends: R (>= 4.0)
SystemRequirements: python
Imports: softImpute, methods, stats, graphics, pdist, reticulate,
        scran, data.table, FNN, matrixStats, rdetools, limma, mvtnorm
License: GPL (>=2)
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/DavisLaboratory/msImpute/issues
RoxygenNote: 7.1.1
Suggests: BiocStyle, knitr, rmarkdown, ComplexHeatmap, imputeLCMD
VignetteBuilder: knitr
biocViews: MassSpectrometry, Proteomics, Software
git_url: https://git.bioconductor.org/packages/msImpute
git_branch: RELEASE_3_13
git_last_commit: 60d2a5e
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-19 22:12:44 UTC; biocbuild
Author: Soroor Hediyeh-zadeh [aut, cre]
    (<https://orcid.org/0000-0001-7513-6779>)
Maintainer: Soroor Hediyeh-zadeh <hediyehzadeh.s@wehi.edu.au>
Built: R 4.1.0; ; 2021-06-05 09:53:37 UTC; unix
