Package: MQmetrics
Type: Package
Title: Quality Control of Protemics Data
Version: 1.0.0
Authors@R: c(person(given = "Alvaro", family = "Sanchez-Villalba",
                    email = "sanchezvillalba.alvaro@gmail.com",
                    role = c("aut", "cre")),
            person(given = "Thomas", family = "Stehrer",
                    email = "thomas.stehrer@fgu.cas.cz",
                    role = "aut"),
            person(given = "Marek", family = "Vrbacky",
            email = "marek.vrbacky@fgu.cas.cz",
            role = "aut"))
Description: The package MQmetrics (MaxQuant metrics) provides a workflow to
        analyze the quality and reproducibility of your proteomics mass
        spectrometry analysis from MaxQuant.Input data are extracted from 
        several MaxQuant output tables, and produces a pdf report. It includes
        several visualization tools to check numerous parameters regarding the
        quality of the runs.It also includes two functions to visualize the iRT
        peptides from Biognosysin case they were spiked in the samples.
biocViews: Infrastructure, Proteomics, MassSpectrometry,
        QualityControl, DataImport
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.1.1
Imports: ggplot2, readr, magrittr, dplyr, purrr, reshape2, gridExtra,
        utils, stringr, chron, ggpubr, stats, cowplot, RColorBrewer,
        ggridges, tidyr, scales, grid, rlang, ggforce, grDevices,
        gtable, plyr, knitr, rmarkdown
VignetteBuilder: knitr
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/MQmetrics
git_branch: RELEASE_3_13
git_last_commit: f3e2d25
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-19 22:11:55 UTC; biocbuild
Author: Alvaro Sanchez-Villalba [aut, cre],
  Thomas Stehrer [aut],
  Marek Vrbacky [aut]
Maintainer: Alvaro Sanchez-Villalba <sanchezvillalba.alvaro@gmail.com>
Built: R 4.1.0; ; 2021-05-30 21:29:43 UTC; unix
