# Analyze massively parallel reporter assays

## Documentation for package ‘mpra’ version 1.28.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

mpra-package | Analyze massively parallel reporter assays
compute_logratio | Compute activity measure (log-ratio) for each element.
getBarcode | Class '"MPRASet"'
getDNA | Class '"MPRASet"'
getEid | Class '"MPRASet"'
getEseq | Class '"MPRASet"'
getRNA | Class '"MPRASet"'
get_precision_weights | Get precision weights from the copy number-variance relationship.
mpra | Analyze massively parallel reporter assays
mpralm | Linear models for differential analysis of MPRA data
MPRASet | Class '"MPRASet"'
MPRASet-class | Class '"MPRASet"'
mpraSetAggExample | Example data for the mpra package.
mpraSetAllelicExample | Example data for the mpra package.
mpraSetExample | Example data for the mpra package.
normalize_counts | Total count normalization of DNA and RNA counts
show-method | Class '"MPRASet"'