confidence	confidence
cscape_somatic_output	cscape_somatic_output
dataDMA	dataDMA
dataFEA	dataFEA
dataFilt	dataFilt
dataGLS	dataGLS
dataGMA	dataGMA
dataGRN	dataGRN
dataGRN_no_noise	dataGRN_no_noise
dataMAF	dataMAF
dataMethyl	dataMethyl
dataPRA	dataPRA
dataURA	dataURA
dataURA_plot	dataURA_plot
DEGsmatrix	DEGsmatrix
DEG_Methylation_Annotations	DEG_Methylation_Annotations
DEG_Mutations_Annotations	DEG_Mutations_Annotations
DiseaseList	DiseaseList
DMA	DMA
EAGenes	EAGenes
EncodePromoters	EncodePromoters
EpiMix_getInfiniumAnnotation	EpiMix_getInfiniumAnnotation
EpiMix_Results_Regular	EpiMix_Results_Regular
FEA	FEA
GEO_TCGAtab	GEO_TCGAtab
getDataGEO	getDataGEO
GLS	GLS
GMA	GMA
GRN	GRN
GSEA	GSEA
knownDriverGenes	knownDriverGenes
LiftMAF	LiftMAF
listMoonlight	listMoonlight
LOC_protein	LOC_protein
LOC_transcription	LOC_transcription
LOC_translation	LOC_translation
LPA	LPA
LUAD_sample_anno	LUAD_sample_anno
MAFtoCscape	MAFtoCscape
MetEvidenceDriver	MetEvidenceDriver
moonlight	moonlight
NCG	NCG
Oncogenic_mediators_methylation_summary	Oncogenic_mediators_methylation_summary
Oncogenic_mediators_mutation_summary	Oncogenic_mediators_mutation_summary
plotCircos	plotCircos
plotDMA	plotDMA
plotFEA	plotFEA
plotGMA	plotGMA
plotHeatmap	plotHeatmap
plotMetExp	plotMetExp
plotMoonlight	plotMoonlight
plotMoonlightMet	plotMoonlightMet
plotNetworkHive	plotNetworkHive
plotURA	plotURA
PRA	PRA
PRAtoTibble	PRAtoTibble
RunCscape_somatic	RunCscape_somatic
tabGrowBlock	tabGrowBlock
tabix_func	tabix_func
URA	URA
