importFrom("grDevices", "gray.colors", "heat.colors")
importFrom("graphics", "abline", "barplot", "layout", 
	"legend", "lines", "matplot", "points", "segments", "text")
importFrom("stats", "cutree", "dist", "hclust", "heatmap", 
	"kmeans", "pnorm", "sd")
importFrom("utils", "head")
importFrom("stats", "p.adjust")

importFrom("genefilter" , "rowSds")
importFrom("genefilter" , "rowFtests")
importFrom("BiocGenerics", "combine")
importFrom("BiocGenerics", "boxplot")
importFrom("gplots", "barplot2")
importFrom("Biobase", "rowMin")
import("methods")
import("graphite")
import("GSEABase")

importFrom("corpcor", "fast.svd")
importFrom("svd", "propack.svd")
importFrom("parallel", "mclapply")
importFrom("cluster", "clusGap", "maxSE")

export(
	"decompose.gs.ind",
	"decompose.gs.group",
	"moa",
	"box.gs.feature",
	"mogsa",
	"pairwise.rv",
	"prepGraphite",
	"prepMsigDB",
	"prepSupMoa",
	"plotGS",
	"sup.moa",
	"wsvd",
	"annotate.gs",
	"GIS",
	"matpower",
	"getmgsa",
	
	"bootMbpca",
	"distMoa",
	"moGap",
	"softK",
	"mbpca",
	"moaScore",
	"moaCoef",
	"bootMoa"
)

exportMethods(
    "plot",
    "combine", 
    "show", 
    "print", 
    "summary"
)

exportClasses(
    "mgsa",
    "moa",
    "moa.sup" 
)
