Package: MMUPHin
Type: Package
Title: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in
        Microbiome Studies
Version: 1.16.0
Author: Siyuan Ma
Maintainer: Siyuan MA <syma.research@gmail.com>
Description: MMUPHin is an R package for meta-analysis tasks of microbiome 
    cohorts. It has function interfaces for:
    a) covariate-controlled batch- and cohort effect adjustment, 
    b) meta-analysis differential abundance testing, 
    c) meta-analysis unsupervised discrete structure (clustering) discovery, and 
    d) meta-analysis unsupervised continuous structure discovery.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.1
VignetteBuilder: knitr
SystemRequirements: glpk (>= 4.57)
Depends: R (>= 3.6)
Imports: Maaslin2, metafor, fpc, igraph, ggplot2, dplyr, tidyr,
        stringr, cowplot, utils, stats, grDevices
Suggests: testthat, BiocStyle, knitr, rmarkdown, magrittr, vegan,
        phyloseq, curatedMetagenomicData, genefilter
biocViews: Metagenomics, Microbiome, BatchEffect
git_url: https://git.bioconductor.org/packages/MMUPHin
git_branch: RELEASE_3_18
git_last_commit: 61bc5dc
git_last_commit_date: 2023-10-24
Date/Publication: 2023-10-24
NeedsCompilation: no
Packaged: 2023-10-24 21:57:43 UTC; biocbuild
Built: R 4.3.2; ; 2023-12-07 03:27:53 UTC; unix
