# Microbiota STability ASsessment via Iterative cluStering

## Documentation for package ‘microSTASIS’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

clr | Detected ASV from multiple individuals at four different sampling times.
iterativeClustering | Stability of individuals after iteratively performing Hartigan-Wong k-means clustering.
iterativeClusteringCV | Cross validation of the iterative Hartigan-Wong k-means clustering.
mSerrorCV | Compute the mean absolute error (MAE) in percentage after 'iterativeClusteringCV()'.
mSinternalPairedTimes | Internal function for 'pairedTimes()'.
mSmetadataGroups | Easily extract groups of individuals from sample metadata.
mSpreviz | Process the 'iterativeClustering()' output to a new format ready for the implemented visualization functions.
pairedTimes | Generate one or multiple matrices with paired times.
pairedTimes-method | Generate one or multiple matrices with paired times.
plotmSdynamics | Generate boxplots of the stability dynamics throughout sampling times by groups.
plotmSheatmap | Plot a heatmap of the stability results.
plotmSlinesCV | Plot the stability values after 'iterativeClusteringCV()'.
plotmSscatter | Plot a scatter and side boxplot of the stability results.