Package: MicrobiotaProcess
Type: Package
Title: an R package for analysis, visualization and biomarker discovery
        of microbiome
Version: 1.2.0
Authors@R: c(person("Shuangbin", "Xu", email = "xshuangbin@163.com", role = c("aut", "cre"), comment=c(ORCID="0000-0003-3513-5362")),
             person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-6485-8781")))
Description: MicrobiotaProcess is an R package for analysis, visualization and 
    biomarker discovery of microbial datasets. It supports calculating alpha 
    index and provides functions to visualize rarefaction curves. Moreover, 
    it also supports visualizing the abundance of taxonomy of samples. And It 
    also provides functions to perform the PCA, PCoA and hierarchical cluster 
    analysis. In addition, MicrobiotaProcess also provides a method for 
    the biomarker discovery of metagenome or other datasets.
Depends: R (>= 4.0.0)
Imports: ape, plyr, tidyr, ggplot2, phyloseq, magrittr, dplyr,
        Biostrings, ggrepel, vegan, reshape, zoo, ggtree, tidytree,
        gtools, MASS, methods, randomForest, rlang, tibble, grDevices,
        stats, utils, coin, ggsignif, scales, Rmisc, DECIPHER,
        biomformat, yaml, phangorn, patchwork
Suggests: DT, prettydoc, treeio, tidyverse, testthat, knitr, nlme
License: GPL (>= 3.0)
URL: https://github.com/YuLab-SMU/MicrobiotaProcess/
BugReports: https://github.com/YuLab-SMU/MicrobiotaProcess/issues
VignetteBuilder: knitr
ByteCompile: true
Encoding: UTF-8
LazyData: false
biocViews: Visualization, Microbiome, Software, MultipleComparison,
        FeatureExtraction
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/MicrobiotaProcess
git_branch: RELEASE_3_12
git_last_commit: 393e3da
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 01:40:57 UTC; biocbuild
Author: Shuangbin Xu [aut, cre] (<https://orcid.org/0000-0003-3513-5362>),
  Guangchuang Yu [aut, ctb] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Shuangbin Xu <xshuangbin@163.com>
Built: R 4.0.3; ; 2020-11-01 13:19:30 UTC; unix
