# An R/shiny package for microbiome functional enrichment analysis

## Documentation for package ‘MicrobiomeProfiler’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

MicrobiomeProfiler-package | Functional enrichment analysis for microbiome data
bitr_smpdb | convert metabolite IDs
enrichCOG | COG enrichment analysis for microbiome data
enrichHMDB | Metabolism enrichment analysis for microbiome data
enrichKO | KO enrichment for microbiome data
enrichMBKEGG | Metabolism enrichment analysis for microbiome data
enrichMDA | Microbe-Disease associations enrichment analysis
enrichSMPDB | Metabolism enrichment analysis for microbiome data
MicrobiomeProfiler | Functional enrichment analysis for microbiome data
microbiota_data | Example data: a vector of 54 bacterial genera tested for significantly between T2D metformin samples
microbiota_taxlist | Example data: a vector of 54 bacterial genera tested for significantly between T2D metformin samples
Psoriasis_data | Example data: a vector of 134 significantly different functional COGs between Psoriasis patients and controls
Rat_data | Example data: a vector of 91 KEGG Orthologies (KOs) showing significant associations with weaning weight
run_MicrobiomeProfiler | Run the Shiny Application