microbiomeMarker-package	microbiomeMarker-package
%>%	reexports
abundances	abundances-methods
abundances,	abundances-methods
abundances,microbiomeMarker-method	abundances-methods
abundances,otu_table-method	abundances-methods
abundances,phyloseq-method	abundances-methods
aggregate_taxa	aggregate_taxa
assign-marker_table	assign-marker_table
assign-otu_table	assign-otu_table
caporaso	data-caporaso
cid_ying	data-cid_ying
compare_DA	compare_DA
confounder	confounder
data-caporaso	data-caporaso
data-cid_ying	data-cid_ying
data-ecam	data-ecam
data-enterotypes_arumugam	data-enterotypes_arumugam
data-kostic_crc	data-kostic_crc
data-oxygen	data-oxygen
data-pediatric_ibd	data-pediatric_ibd
data-spontaneous_colitis	data-spontaneous_colitis
ecam	data-ecam
ef-barplot,ef-dotplot	effect_size-plot
enterotypes_arumugam	data-enterotypes_arumugam
extract_posthoc_res	extract_posthoc_res
get_treedata_phyloseq	get_treedata_phyloseq
import_biom	reexports
import_dada2	import_dada2
import_mothur	reexports
import_picrust2	import_picrust2
import_qiime	reexports
import_qiime2	import_qiime2
kostic_crc	data-kostic_crc
marker_table	marker_table-methods
marker_table,data.frame-method	marker_table-methods
marker_table,microbiomeMarker-method	marker_table-methods
marker_table-class	marker_table-class
marker_table<-	assign-marker_table
microbiomeMarker	microbiomeMarker
microbiomeMarker-class	microbiomeMarker-class
nmarker	nmarker-methods
nmarker,marker_table-method	nmarker-methods
nmarker,microbiomeMarker-method	nmarker-methods
normalize	normalize-methods
normalize,data.frame-method	normalize-methods
normalize,matrix-method	normalize-methods
normalize,otu_table-method	normalize-methods
normalize,phyloseq-method	normalize-methods
norm_clr	normalize-methods
norm_cpm	normalize-methods
norm_css	normalize-methods
norm_rarefy	normalize-methods
norm_rle	normalize-methods
norm_tmm	normalize-methods
norm_tss	normalize-methods
nsamples	reexports
ntaxa	reexports
otu_table	reexports
otu_table-method	abundances-methods
otu_table2metagenomeSeq	phyloseq2metagenomeSeq
otu_table<-,microbiomeMarker,microbiomeMarker-method	assign-otu_table
otu_table<-,microbiomeMarker,otu_table-method	assign-otu_table
otu_table<-,microbiomeMarker,phyloseq-method	assign-otu_table
oxygen	data-oxygen
pediatric_ibd	data-pediatric_ibd
phyloseq2DESeq2	phyloseq2DESeq2
phyloseq2edgeR	phyloseq2edgeR
phyloseq2metagenomeSeq	phyloseq2metagenomeSeq
plot.compareDA	plot.compareDA
plot_abundance	plot_abundance
plot_cladogram	plot_cladogram
plot_ef_bar	effect_size-plot
plot_ef_dot	effect_size-plot
plot_heatmap	plot_heatmap
plot_postHocTest	plot_postHocTest
plot_sl_roc	plot_sl_roc
postHocTest	postHocTest
postHocTest-class	postHocTest-class
postHocTest-method	postHocTest-class
reexports	reexports
run_aldex	run_aldex
run_ancom	run_ancom
run_ancombc	run_ancombc
run_deseq2	run_deseq2
run_edger	run_edger
run_lefse	run_lefse
run_limma_voom	run_limma_voom
run_marker	run_marker
run_metagenomeseq	run_metagenomeseq
run_posthoc_test	run_posthoc_test
run_simple_stat	run_simple_stat
run_sl	run_sl
run_test_multiple_groups	run_test_multiple_groups
run_test_two_groups	run_test_two_groups
sample_data	reexports
sample_names	reexports
show,	postHocTest-class
show,microbiomeMarker-method	microbiomeMarker-class
show,postHocTest-method	postHocTest-class
spontaneous_colitis	data-spontaneous_colitis
subset_marker	subset_marker
summarize_taxa	summarize_taxa
summary.compareDA	summary.compareDA
taxa_names	reexports
tax_table	reexports
transform_abundances	transform_abundances
[	extract-methods
[,marker_table,ANY,ANY,ANY-method	extract-methods
