# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Dec 12 16:07:03 2023
# ------------------------------------------------

package:
  name: bioconductor-methylcc
  version: 1.16.0
source:
  md5: 77566e7338f615ca5305d6e00465908b
  url:
    - https://bioarchive.galaxyproject.org/methylCC_1.16.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/Archive/methylCC/methylCC_1.16.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/methylCC_1.16.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-methylcc/bioconductor-methylcc_1.16.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  run_exports: bioconductor-methylcc >=1.16.0,<1.17.0a0
  string: r43hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - argcomplete 3.2.1 pyhd8ed1ab_0
    - binutils_impl_linux-64 2.40 hf600244_0
    - bioconductor-annotate 1.80.0 r43hdfd78af_0
    - bioconductor-annotationdbi 1.64.1 r43hdfd78af_0
    - bioconductor-beachmat 2.18.0 r43hf17093f_0
    - bioconductor-biobase 2.62.0 r43ha9d7317_1
    - bioconductor-biocfilecache 2.10.1 r43hdfd78af_0
    - bioconductor-biocgenerics 0.48.1 r43hdfd78af_2
    - bioconductor-biocio 1.12.0 r43hdfd78af_0
    - bioconductor-biocparallel 1.36.0 r43hf17093f_1
    - bioconductor-biomart 2.58.0 r43hdfd78af_0
    - bioconductor-biostrings 2.70.1 r43ha9d7317_1
    - bioconductor-bsgenome 1.70.1 r43hdfd78af_0
    - bioconductor-bsseq 1.38.0 r43hf17093f_0
    - bioconductor-bumphunter 1.44.0 r43hdfd78af_0
    - bioconductor-data-packages 20231203 hdfd78af_0
    - bioconductor-delayedarray 0.28.0 r43ha9d7317_1
    - bioconductor-delayedmatrixstats 1.24.0 r43hdfd78af_0
    - bioconductor-flowsorted.blood.450k 1.40.0 r43hdfd78af_0
    - bioconductor-genefilter 1.84.0 r43ha1e849b_0
    - bioconductor-genomeinfodb 1.38.1 r43hdfd78af_1
    - bioconductor-genomeinfodbdata 1.2.11 r43hdfd78af_1
    - bioconductor-genomicalignments 1.38.0 r43ha9d7317_0
    - bioconductor-genomicfeatures 1.54.1 r43hdfd78af_0
    - bioconductor-genomicranges 1.54.1 r43ha9d7317_1
    - bioconductor-geoquery 2.70.0 r43hdfd78af_0
    - bioconductor-hdf5array 1.30.0 r43ha9d7317_0
    - bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 0.6.1 r43hdfd78af_2
    - bioconductor-illuminahumanmethylation450kmanifest 0.4.0 r43hdfd78af_16
    - bioconductor-illuminaio 0.44.0 r43ha9d7317_1
    - bioconductor-iranges 2.36.0 r43ha9d7317_1
    - bioconductor-keggrest 1.42.0 r43hdfd78af_0
    - bioconductor-limma 3.58.1 r43ha9d7317_0
    - bioconductor-matrixgenerics 1.14.0 r43hdfd78af_1
    - bioconductor-minfi 1.48.0 r43hdfd78af_0
    - bioconductor-multtest 2.58.0 r43ha9d7317_0
    - bioconductor-plyranges 1.22.0 r43hdfd78af_0
    - bioconductor-preprocesscore 1.64.0 r43ha9d7317_1
    - bioconductor-rhdf5 2.46.1 r43hf17093f_0
    - bioconductor-rhdf5filters 1.14.1 r43hf17093f_0
    - bioconductor-rhdf5lib 1.24.0 r43ha9d7317_1
    - bioconductor-rhtslib 2.4.0 r43ha9d7317_1
    - bioconductor-rsamtools 2.18.0 r43hf17093f_1
    - bioconductor-rtracklayer 1.62.0 r43ha9d7317_0
    - bioconductor-s4arrays 1.2.0 r43ha9d7317_1
    - bioconductor-s4vectors 0.40.2 r43ha9d7317_1
    - bioconductor-siggenes 1.76.0 r43hdfd78af_0
    - bioconductor-sparsearray 1.2.2 r43ha9d7317_1
    - bioconductor-sparsematrixstats 1.14.0 r43hf17093f_0
    - bioconductor-summarizedexperiment 1.32.0 r43hdfd78af_0
    - bioconductor-xvector 0.42.0 r43ha9d7317_1
    - bioconductor-zlibbioc 1.48.0 r43ha9d7317_1
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 hd590300_5
    - c-ares 1.23.0 hd590300_0
    - ca-certificates 2023.11.17 hbcca054_0
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    - curl 8.5.0 hca28451_0
    - expat 2.5.0 hcb278e6_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
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    - font-ttf-ubuntu 0.83 h77eed37_1
    - fontconfig 2.14.2 h14ed4e7_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 h267a509_2
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 13.2.0 h338b0a0_3
    - gettext 0.21.1 h27087fc_0
    - gfortran_impl_linux-64 13.2.0 h76e1118_3
    - graphite2 1.3.13 h58526e2_1001
    - gxx_impl_linux-64 13.2.0 h338b0a0_3
    - harfbuzz 8.3.0 h3d44ed6_0
    - icu 73.2 h59595ed_0
    - jq 1.7 hd590300_0
    - kernel-headers_linux-64 2.6.32 he073ed8_16
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.2 h659d440_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 20_linux64_openblas
    - libcurl 8.5.0 hca28451_0
    - libdeflate 1.19 hd590300_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 hd590300_2
    - libexpat 2.5.0 hcb278e6_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 13.2.0 ha9c7c90_103
    - libgcc-ng 13.2.0 h807b86a_3
    - libgfortran-ng 13.2.0 h69a702a_3
    - libgfortran5 13.2.0 ha4646dd_3
    - libglib 2.78.3 h783c2da_0
    - libgomp 13.2.0 h807b86a_3
    - libiconv 1.17 hd590300_1
    - libjpeg-turbo 3.0.0 hd590300_1
    - liblapack 3.9.0 20_linux64_openblas
    - libnghttp2 1.58.0 h47da74e_1
    - libnsl 2.0.1 hd590300_0
    - libopenblas 0.3.25 pthreads_h413a1c8_0
    - libpng 1.6.39 h753d276_0
    - libsanitizer 13.2.0 h7e041cc_3
    - libsqlite 3.44.2 h2797004_0
    - libssh2 1.11.0 h0841786_0
    - libstdcxx-devel_linux-64 13.2.0 ha9c7c90_103
    - libstdcxx-ng 13.2.0 h7e041cc_3
    - libtiff 4.6.0 ha9c0a0a_2
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.3.2 hd590300_0
    - libxcb 1.15 h0b41bf4_0
    - libxml2 2.11.6 h232c23b_0
    - libzlib 1.2.13 hd590300_5
    - make 4.3 hd18ef5c_1
    - ncurses 6.4 h59595ed_2
    - oniguruma 6.9.9 hd590300_0
    - openssl 3.2.0 hd590300_1
    - pango 1.50.14 ha41ecd1_2
    - pcre2 10.42 hcad00b1_0
    - pip 23.3.1 pyhd8ed1ab_0
    - pixman 0.42.2 h59595ed_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - python 3.12.0 hab00c5b_0_cpython
    - python_abi 3.12 4_cp312
    - pyyaml 6.0.1 py312h98912ed_1
    - r-abind 1.4_5 r43hc72bb7e_1005
    - r-askpass 1.2.0 r43h57805ef_0
    - r-assertthat 0.2.1 r43hc72bb7e_4
    - r-backports 1.4.1 r43h57805ef_2
    - r-base 4.3.2 hb8ee39d_1
    - r-base64 2.0.1 r43ha770c72_2
    - r-beanplot 1.3.1 r43ha770c72_2
    - r-bh 1.81.0_1 r43hc72bb7e_1
    - r-bibtex 0.5.1 r43hc72bb7e_1
    - r-bit 4.0.5 r43h57805ef_1
    - r-bit64 4.0.5 r43h57805ef_2
    - r-bitops 1.0_7 r43h57805ef_2
    - r-blob 1.2.4 r43hc72bb7e_1
    - r-cachem 1.0.8 r43h57805ef_1
    - r-cli 3.6.2 r43ha503ecb_0
    - r-clipr 0.8.0 r43hc72bb7e_2
    - r-codetools 0.2_19 r43hc72bb7e_1
    - r-colorspace 2.1_0 r43h57805ef_1
    - r-cpp11 0.4.7 r43hc72bb7e_0
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-curl 5.1.0 r43hf9611b0_0
    - r-data.table 1.14.10 r43h029312a_0
    - r-dbi 1.1.3 r43hc72bb7e_2
    - r-dbplyr 2.4.0 r43hc72bb7e_0
    - r-digest 0.6.33 r43ha503ecb_0
    - r-dorng 1.8.6 r43hc72bb7e_1
    - r-dplyr 1.1.4 r43ha503ecb_0
    - r-ellipsis 0.3.2 r43h57805ef_2
    - r-fansi 1.0.6 r43h57805ef_0
    - r-farver 2.1.1 r43ha503ecb_2
    - r-fastmap 1.1.1 r43ha503ecb_1
    - r-filelock 1.0.3 r43h57805ef_0
    - r-foreach 1.5.2 r43hc72bb7e_2
    - r-formatr 1.14 r43hc72bb7e_1
    - r-futile.logger 1.4.3 r43hc72bb7e_1005
    - r-futile.options 1.0.1 r43hc72bb7e_1004
    - r-generics 0.1.3 r43hc72bb7e_2
    - r-glue 1.6.2 r43h57805ef_2
    - r-gtools 3.9.5 r43h57805ef_0
    - r-hms 1.1.3 r43hc72bb7e_1
    - r-httr 1.4.7 r43hc72bb7e_0
    - r-iterators 1.0.14 r43hc72bb7e_2
    - r-jsonlite 1.8.8 r43h57805ef_0
    - r-labeling 0.4.3 r43hc72bb7e_0
    - r-lambda.r 1.2.4 r43hc72bb7e_3
    - r-lattice 0.22_5 r43h57805ef_0
    - r-lifecycle 1.0.4 r43hc72bb7e_0
    - r-locfit 1.5_9.8 r43h57805ef_1
    - r-magrittr 2.0.3 r43h57805ef_2
    - r-mass 7.3_60 r43h57805ef_1
    - r-matrix 1.6_4 r43h316c678_0
    - r-matrixstats 1.2.0 r43h57805ef_0
    - r-mclust 6.0.1 r43hd9ac46e_0
    - r-memoise 2.0.1 r43hc72bb7e_2
    - r-mime 0.12 r43h57805ef_2
    - r-munsell 0.5.0 r43hc72bb7e_1006
    - r-nlme 3.1_164 r43h61816a4_0
    - r-nor1mix 1.3_0 r43hc72bb7e_4
    - r-openssl 2.1.1 r43hb353fa6_0
    - r-permute 0.9_7 r43hc72bb7e_2
    - r-pillar 1.9.0 r43hc72bb7e_1
    - r-pkgconfig 2.0.3 r43hc72bb7e_3
    - r-pkgmaker 0.32.10 r43hc72bb7e_1
    - r-plogr 0.2.0 r43hc72bb7e_1005
    - r-plyr 1.8.9 r43ha503ecb_0
    - r-png 0.1_8 r43h81d01c5_1
    - r-prettyunits 1.2.0 r43hc72bb7e_0
    - r-progress 1.2.3 r43hc72bb7e_0
    - r-purrr 1.0.2 r43h57805ef_0
    - r-quadprog 1.5_8 r43h13b3f57_5
    - r-r.methodss3 1.8.2 r43hc72bb7e_2
    - r-r.oo 1.25.0 r43hc72bb7e_2
    - r-r.utils 2.12.3 r43hc72bb7e_0
    - r-r6 2.5.1 r43hc72bb7e_2
    - r-rappdirs 0.3.3 r43h57805ef_2
    - r-rcolorbrewer 1.1_3 r43h785f33e_2
    - r-rcpp 1.0.11 r43h7df8631_0
    - r-rcurl 1.98_1.13 r43hf9611b0_0
    - r-readr 2.1.4 r43ha503ecb_1
    - r-registry 0.5_1 r43hc72bb7e_4
    - r-reshape 0.8.9 r43hc72bb7e_2
    - r-restfulr 0.0.15 r43h56115f1_3
    - r-rjson 0.2.21 r43ha503ecb_3
    - r-rlang 1.1.2 r43ha503ecb_0
    - r-rngtools 1.5.2 r43hc72bb7e_2
    - r-rsqlite 2.3.4 r43ha503ecb_0
    - r-scales 1.3.0 r43hc72bb7e_0
    - r-scrime 1.3.5 r43hc72bb7e_3
    - r-snow 0.4_4 r43hc72bb7e_2
    - r-statmod 1.5.0 r43hd8f1df9_1
    - r-stringi 1.8.3 r43h9facbd6_0
    - r-stringr 1.5.1 r43h785f33e_0
    - r-survival 3.5_7 r43h57805ef_0
    - r-sys 3.4.2 r43h57805ef_1
    - r-tibble 3.2.1 r43h57805ef_2
    - r-tidyr 1.3.0 r43ha503ecb_1
    - r-tidyselect 1.2.0 r43hc72bb7e_1
    - r-tzdb 0.4.0 r43ha503ecb_1
    - r-utf8 1.2.4 r43h57805ef_0
    - r-vctrs 0.6.5 r43ha503ecb_0
    - r-viridislite 0.4.2 r43hc72bb7e_1
    - r-vroom 1.6.5 r43ha503ecb_0
    - r-withr 2.5.2 r43hc72bb7e_0
    - r-xml 3.99_0.16 r43hc38eee6_0
    - r-xml2 1.3.6 r43h1ad5fc0_0
    - r-xtable 1.8_4 r43hc72bb7e_5
    - r-yaml 2.3.8 r43h57805ef_0
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - setuptools 68.2.2 pyhd8ed1ab_0
    - sysroot_linux-64 2.12 he073ed8_16
    - tk 8.6.13 noxft_h4845f30_101
    - tktable 2.10 h0c5db8f_5
    - toml 0.10.2 pyhd8ed1ab_0
    - tomlkit 0.12.3 pyha770c72_0
    - tzdata 2023c h71feb2d_0
    - wheel 0.42.0 pyhd8ed1ab_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.1.1 hd590300_0
    - xorg-libsm 1.2.4 h7391055_0
    - xorg-libx11 1.8.7 h8ee46fc_0
    - xorg-libxau 1.0.11 hd590300_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.11 hd590300_0
    - xorg-libxt 1.3.0 hd590300_1
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - yaml 0.2.5 h7f98852_2
    - yq 3.2.3 pyhd8ed1ab_0
    - zlib 1.2.13 hd590300_5
    - zstd 1.5.5 hfc55251_0
  run:
    - bioconductor-biobase >=2.62.0,<2.63.0
    - bioconductor-bsseq >=1.38.0,<1.39.0
    - bioconductor-bumphunter >=1.44.0,<1.45.0
    - bioconductor-flowsorted.blood.450k >=1.40.0,<1.41.0
    - bioconductor-genefilter >=1.84.0,<1.85.0
    - bioconductor-genomicranges >=1.54.0,<1.55.0
    - bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0
    - bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0
    - bioconductor-iranges >=2.36.0,<2.37.0
    - bioconductor-minfi >=1.48.0,<1.49.0
    - bioconductor-plyranges >=1.22.0,<1.23.0
    - bioconductor-s4vectors >=0.40.0,<0.41.0
    - r-base >=4.3,<4.4.0a0
    - r-dplyr
    - r-magrittr
    - r-quadprog
test:
  commands:
    - $R -e "library('methylCC')"
about:
  description: A tool to estimate the cell composition of DNA methylation whole blood
    sample measured on any platform technology (microarray and sequencing).
  home: https://bioconductor.org/packages/3.18/bioc/html/methylCC.html
  license: GPL-3
  license_file: /opt/conda/conda-bld/bioconductor-methylcc_1702413814711/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/share/licenses/GPL-3
  summary: Estimate the cell composition of whole blood in DNA methylation samples
extra:
  copy_test_source_files: true
  final: true
