.WFun                   Helper function to take the product of Z and
                        cell composition estimates
.extract_raw_data       Extract raw data
.find_dmrs              Finding differentially methylated regions
.initializeMLEs         .initializeMLEs
.initialize_theta       .initialize_theta
.methylcc_engine        .methylcc_engine
.methylcc_estep         Expectation step
.methylcc_mstep         Maximization step
.pick_target_positions
                        Pick target positions
.preprocess_estimatecc
                        .preprocess_estimatecc
.splitit                .splitit
FlowSorted.Blood.450k.sub
                        A reduced size of the FlowSorted.Blood.450k
                        dataset
cell_counts             Generic function that returns the cell
                        composition estimates
estimatecc              Estimate cell composition from DNAm data
estimatecc-class        the estimatecc class
offMethRegions          Unmethylated regions for all celltypes
onMethRegions           Methylated regions for all celltypes
