{% set version = "1.16.0" %}
{% set name = "methylCC" %}
{% set bioc = "3.18" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 77566e7338f615ca5305d6e00465908b
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  run_exports: '{{ pin_subpackage("bioconductor-methylcc", max_pin="x.x") }}'
  noarch: generic
# Suggests: rmarkdown, knitr, testthat (>= 2.1.0), BiocGenerics, BiocStyle, tidyr, ggplot2
requirements:
  host:
    - 'bioconductor-biobase >=2.62.0,<2.63.0'
    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
    - 'bioconductor-flowsorted.blood.450k >=1.40.0,<1.41.0'
    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
    - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
    - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
    - 'bioconductor-iranges >=2.36.0,<2.37.0'
    - 'bioconductor-minfi >=1.48.0,<1.49.0'
    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
    - r-base
    - r-dplyr
    - r-magrittr
    - r-quadprog
  run:
    - 'bioconductor-biobase >=2.62.0,<2.63.0'
    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
    - 'bioconductor-flowsorted.blood.450k >=1.40.0,<1.41.0'
    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
    - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
    - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
    - 'bioconductor-iranges >=2.36.0,<2.37.0'
    - 'bioconductor-minfi >=1.48.0,<1.49.0'
    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
    - r-base
    - r-dplyr
    - r-magrittr
    - r-quadprog
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: GPL-3
  summary: 'Estimate the cell composition of whole blood in DNA methylation samples'
  description: 'A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

