Package: methyAnalysis
Type: Package
Title: DNA methylation data analysis and visualization
Version: 1.32.0
Date: 2020-09-08
Depends: R (>= 2.10), grid, BiocGenerics, IRanges, GenomeInfoDb (>=
        1.22.0), GenomicRanges, Biobase (>= 2.34.0), org.Hs.eg.db
Imports: grDevices, stats, utils, lumi, methylumi, Gviz, genoset,
        SummarizedExperiment, IRanges, GenomicRanges,
        VariantAnnotation, rtracklayer,
        bigmemoryExtras,GenomicFeatures, annotate, Biobase (>= 2.5.5),
        AnnotationDbi, genefilter, biomaRt, methods, parallel
Suggests: FDb.InfiniumMethylation.hg19,
        TxDb.Hsapiens.UCSC.hg19.knownGene
Author: Pan Du, Richard Bourgon
Maintainer: Lei Huang <lhuang1998@gmail.com>
Description: The methyAnalysis package aims for the DNA methylation data  
     analysis and visualization. A MethyGenoSet class is defined to keep the 
     chromosome location information together with the data. The package also includes
     functions of estimating the methylation levels from Methy-Seq data.
License: Artistic-2.0
LazyLoad: yes
biocViews: Microarray, DNAMethylation, Visualization
Collate: 'MethyGenoSet-class.R' 'methyAnalysis.R'
        'heatmapByChromosome.R' 'methyl-seq.R'
NeedsCompilation: no
Packaged: 2020-10-28 01:37:16 UTC; biocbuild
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/methyAnalysis
git_branch: RELEASE_3_12
git_last_commit: 722c722
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
Built: R 4.0.3; ; 2020-11-03 08:17:49 UTC; unix
