Package: methrix
Title: Fast and efficient summarization of generic bedGraph files from
        Bisufite sequencing
Version: 1.0.0
Authors@R: c(
  person("Anand","Mayakonda", role = c("aut", "cre"), email = "anand_mt@hotmail.com"),
  person("Reka","Toth", role = "aut", email = "r.toth@dkfz.de"),
  person("Maximilian","Schönung", role = "ctb"),
  person("Pavlo","Lutsik", role = "ctb"),
  person("Joschka","Hey", role = "ctb"))
Description: Bedgraph files generated by Bisulfite pipelines often come in various flavors. Critical downstream step requires summarization of these files into methylation/coverage matrices. This step of data aggregation is done by Methrix, including many other useful downstream functions.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Depends: R (>= 3.6), data.table (>= 1.12.4), SummarizedExperiment
Imports: DelayedArray, HDF5Array, BSgenome, rjson, DelayedMatrixStats,
        parallel, methods, ggplot2, matrixStats, graphics, stats, utils
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown, DSS, bsseq, plotly,
        BSgenome.Mmusculus.UCSC.mm9, MafDb.1Kgenomes.phase3.GRCh38,
        MafDb.1Kgenomes.phase3.hs37d5, GenomicScores, Biostrings,
        RColorBrewer, GenomicRanges, GenomeInfoDb, IRanges, testthat
        (>= 2.1.0)
VignetteBuilder: knitr
biocViews: DNAMethylation, Sequencing, Coverage
git_url: https://git.bioconductor.org/packages/methrix
git_branch: RELEASE_3_10
git_last_commit: 70b53e1
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
NeedsCompilation: no
Packaged: 2019-10-30 04:05:02 UTC; biocbuild
Author: Anand Mayakonda [aut, cre],
  Reka Toth [aut],
  Maximilian Schönung [ctb],
  Pavlo Lutsik [ctb],
  Joschka Hey [ctb]
Maintainer: Anand Mayakonda <anand_mt@hotmail.com>
Built: R 3.6.1; ; 2019-11-04 14:41:24 UTC; unix
