# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Jul 17 17:03:14 2023
# ------------------------------------------------

package:
  name: bioconductor-methreg
  version: 1.10.0
source:
  md5: 33bbfd93bde253c973cc8324e4475bde
  url:
    - https://bioarchive.galaxyproject.org/MethReg_1.10.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/Archive/MethReg/MethReg_1.10.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/MethReg_1.10.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-methreg/bioconductor-methreg_1.10.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r43hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - argcomplete 3.1.1 pyhd8ed1ab_0
    - binutils_impl_linux-64 2.40 hf600244_0
    - bioconductor-annotationdbi 1.62.2 r43hdfd78af_0
    - bioconductor-annotationhub 3.8.0 r43hdfd78af_0
    - bioconductor-biobase 2.60.0 r43ha9d7317_0
    - bioconductor-biocfilecache 2.8.0 r43hdfd78af_0
    - bioconductor-biocgenerics 0.46.0 r43hdfd78af_0
    - bioconductor-biocparallel 1.34.2 r43hf17093f_0
    - bioconductor-biocversion 3.17.1 r43hdfd78af_0
    - bioconductor-biostrings 2.68.1 r43ha9d7317_0
    - bioconductor-data-packages 20230717 hdfd78af_0
    - bioconductor-delayedarray 0.26.6 r43ha9d7317_0
    - bioconductor-experimenthub 2.8.0 r43hdfd78af_0
    - bioconductor-genomeinfodb 1.36.1 r43hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.10 r43hdfd78af_0
    - bioconductor-genomicranges 1.52.0 r43ha9d7317_0
    - bioconductor-illuminaio 0.42.0 r43ha9d7317_0
    - bioconductor-interactivedisplaybase 1.38.0 r43hdfd78af_0
    - bioconductor-iranges 2.34.1 r43ha9d7317_0
    - bioconductor-keggrest 1.40.0 r43hdfd78af_0
    - bioconductor-matrixgenerics 1.12.2 r43hdfd78af_0
    - bioconductor-preprocesscore 1.62.1 r43ha9d7317_0
    - bioconductor-s4arrays 1.0.4 r43ha9d7317_0
    - bioconductor-s4vectors 0.38.1 r43ha9d7317_0
    - bioconductor-sesame 1.18.4 r43hdfd78af_0
    - bioconductor-sesamedata 1.18.0 r43hdfd78af_0
    - bioconductor-summarizedexperiment 1.30.2 r43hdfd78af_0
    - bioconductor-xvector 0.40.0 r43ha9d7317_0
    - bioconductor-zlibbioc 1.46.0 r43ha9d7317_0
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.19.1 hd590300_0
    - ca-certificates 2023.5.7 hbcca054_0
    - cairo 1.16.0 hbbf8b49_1016
    - curl 8.1.2 hca28451_1
    - expat 2.5.0 hcb278e6_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.2 h14ed4e7_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hca18f0e_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 13.1.0 hc4be1a9_0
    - gettext 0.21.1 h27087fc_0
    - gfortran_impl_linux-64 13.1.0 hd511a9b_0
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 13.1.0 hc4be1a9_0
    - harfbuzz 7.3.0 hdb3a94d_0
    - icu 72.1 hcb278e6_0
    - jq 1.6 h36c2ea0_1000
    - kernel-headers_linux-64 2.6.32 he073ed8_16
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.1 h659d440_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 17_linux64_openblas
    - libcblas 3.9.0 17_linux64_openblas
    - libcurl 8.1.2 hca28451_1
    - libdeflate 1.18 h0b41bf4_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libexpat 2.5.0 hcb278e6_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 13.1.0 he3cc6c4_0
    - libgcc-ng 13.1.0 he5830b7_0
    - libgfortran-ng 13.1.0 h69a702a_0
    - libgfortran5 13.1.0 h15d22d2_0
    - libglib 2.76.4 hebfc3b9_0
    - libgomp 13.1.0 he5830b7_0
    - libiconv 1.17 h166bdaf_0
    - libjpeg-turbo 2.1.5.1 h0b41bf4_0
    - liblapack 3.9.0 17_linux64_openblas
    - libnghttp2 1.52.0 h61bc06f_0
    - libnsl 2.0.0 h7f98852_0
    - libopenblas 0.3.23 pthreads_h80387f5_0
    - libpng 1.6.39 h753d276_0
    - libsanitizer 13.1.0 hfd8a6a1_0
    - libsqlite 3.42.0 h2797004_0
    - libssh2 1.11.0 h0841786_0
    - libstdcxx-devel_linux-64 13.1.0 he3cc6c4_0
    - libstdcxx-ng 13.1.0 hfd8a6a1_0
    - libtiff 4.5.1 h8b53f26_0
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.3.1 hd590300_0
    - libxcb 1.15 h0b41bf4_0
    - libxml2 2.11.4 h0d562d8_0
    - libzlib 1.2.13 hd590300_5
    - make 4.3 hd18ef5c_1
    - ncurses 6.4 hcb278e6_0
    - nlopt 2.7.1 py311he53e775_3
    - numpy 1.25.1 py311h64a7726_0
    - oniguruma 6.9.8 h166bdaf_0
    - openssl 3.1.1 hd590300_1
    - pandoc 2.19.2 h32600fe_2
    - pango 1.50.14 heaa33ce_1
    - pcre2 10.40 hc3806b6_0
    - pip 23.2 pyhd8ed1ab_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - python 3.11.4 hab00c5b_0_cpython
    - python_abi 3.11 3_cp311
    - pyyaml 6.0 py311hd4cff14_5
    - r-abind 1.4_5 r43hc72bb7e_1005
    - r-askpass 1.1 r43h57805ef_4
    - r-assertthat 0.2.1 r43hc72bb7e_4
    - r-backports 1.4.1 r43h57805ef_2
    - r-base 4.3.1 hb1b9b86_2
    - r-base64 2.0.1 r43ha770c72_2
    - r-base64enc 0.1_3 r43h57805ef_1006
    - r-bh 1.81.0_1 r43hc72bb7e_1
    - r-biocmanager 1.30.21 r43hc72bb7e_1
    - r-bit 4.0.5 r43h57805ef_1
    - r-bit64 4.0.5 r43h57805ef_2
    - r-bitops 1.0_7 r43h57805ef_2
    - r-blob 1.2.4 r43hc72bb7e_1
    - r-boot 1.3_28.1 r43hc72bb7e_1
    - r-broom 1.0.5 r43hc72bb7e_1
    - r-bslib 0.5.0 r43hc72bb7e_1
    - r-cachem 1.0.8 r43h57805ef_1
    - r-car 3.1_2 r43hc72bb7e_1
    - r-cardata 3.0_5 r43hc72bb7e_2
    - r-caret 6.0_94 r43h57805ef_1
    - r-cellranger 1.1.0 r43hc72bb7e_1006
    - r-class 7.3_22 r43h57805ef_1
    - r-cli 3.6.1 r43ha503ecb_1
    - r-clipr 0.8.0 r43hc72bb7e_2
    - r-clock 0.7.0 r43ha503ecb_1
    - r-codetools 0.2_19 r43hc72bb7e_1
    - r-colorspace 2.1_0 r43h57805ef_1
    - r-commonmark 1.9.0 r43h57805ef_1
    - r-conquer 1.3.3 r43h08d816e_2
    - r-corrplot 0.92 r43hc72bb7e_2
    - r-cowplot 1.1.1 r43hc72bb7e_2
    - r-cpp11 0.4.4 r43hc72bb7e_0
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-crosstalk 1.2.0 r43hc72bb7e_2
    - r-curl 5.0.1 r43hf9611b0_0
    - r-data.table 1.14.8 r43h029312a_2
    - r-dbi 1.1.3 r43hc72bb7e_2
    - r-dbplyr 2.3.3 r43hc72bb7e_0
    - r-diagram 1.6.5 r43ha770c72_2
    - r-digest 0.6.33 r43ha503ecb_0
    - r-dplyr 1.1.2 r43ha503ecb_1
    - r-dt 0.28 r43hc72bb7e_1
    - r-e1071 1.7_13 r43ha503ecb_1
    - r-ellipsis 0.3.2 r43h57805ef_2
    - r-evaluate 0.21 r43hc72bb7e_1
    - r-fansi 1.0.4 r43h57805ef_1
    - r-farver 2.1.1 r43ha503ecb_2
    - r-fastmap 1.1.1 r43ha503ecb_1
    - r-filelock 1.0.2 r43h57805ef_1004
    - r-fontawesome 0.5.1 r43hc72bb7e_1
    - r-forcats 1.0.0 r43hc72bb7e_1
    - r-foreach 1.5.2 r43hc72bb7e_2
    - r-foreign 0.8_84 r43h57805ef_1
    - r-formatr 1.14 r43hc72bb7e_1
    - r-fs 1.6.2 r43ha503ecb_1
    - r-futile.logger 1.4.3 r43hc72bb7e_1005
    - r-futile.options 1.0.1 r43hc72bb7e_1004
    - r-future 1.33.0 r43hc72bb7e_0
    - r-future.apply 1.11.0 r43hc72bb7e_1
    - r-generics 0.1.3 r43hc72bb7e_2
    - r-ggplot2 3.4.2 r43hc72bb7e_1
    - r-ggpubr 0.6.0 r43hc72bb7e_1
    - r-ggrepel 0.9.3 r43ha503ecb_1
    - r-ggsci 3.0.0 r43hc72bb7e_1
    - r-ggsignif 0.6.4 r43hc72bb7e_1
    - r-globals 0.16.2 r43hc72bb7e_1
    - r-glue 1.6.2 r43h57805ef_2
    - r-gower 1.0.1 r43h57805ef_1
    - r-gridextra 2.3 r43hc72bb7e_1005
    - r-gtable 0.3.3 r43hc72bb7e_1
    - r-hardhat 1.3.0 r43hc72bb7e_1
    - r-haven 2.5.3 r43ha503ecb_0
    - r-highr 0.10 r43hc72bb7e_1
    - r-hms 1.1.3 r43hc72bb7e_1
    - r-htmltools 0.5.5 r43ha503ecb_1
    - r-htmlwidgets 1.6.2 r43hc72bb7e_1
    - r-httpuv 1.6.11 r43ha503ecb_1
    - r-httr 1.4.6 r43hc72bb7e_1
    - r-ipred 0.9_14 r43h57805ef_1
    - r-isoband 0.2.7 r43ha503ecb_2
    - r-iterators 1.0.14 r43hc72bb7e_2
    - r-jquerylib 0.1.4 r43hc72bb7e_2
    - r-jsonlite 1.8.7 r43h57805ef_0
    - r-kernsmooth 2.23_22 r43h13b3f57_0
    - r-knitr 1.43 r43hc72bb7e_1
    - r-labeling 0.4.2 r43hc72bb7e_3
    - r-lambda.r 1.2.4 r43hc72bb7e_3
    - r-later 1.3.1 r43ha503ecb_1
    - r-lattice 0.21_8 r43h57805ef_1
    - r-lava 1.7.2.1 r43hc72bb7e_1
    - r-lazyeval 0.2.2 r43h57805ef_4
    - r-lifecycle 1.0.3 r43hc72bb7e_2
    - r-listenv 0.9.0 r43hc72bb7e_1
    - r-lme4 1.1_34 r43ha503ecb_0
    - r-lubridate 1.9.2 r43h57805ef_2
    - r-magrittr 2.0.3 r43h57805ef_2
    - r-maptools 1.1_7 r43h57805ef_1
    - r-mass 7.3_60 r43h57805ef_1
    - r-matrix 1.6_0 r43h316c678_0
    - r-matrixmodels 0.5_2 r43hc72bb7e_0
    - r-matrixstats 1.0.0 r43h57805ef_1
    - r-memoise 2.0.1 r43hc72bb7e_2
    - r-mgcv 1.9_0 r43h316c678_0
    - r-mime 0.12 r43h57805ef_2
    - r-minqa 1.2.5 r43hcf54a89_1
    - r-modelmetrics 1.2.2.2 r43ha503ecb_3
    - r-munsell 0.5.0 r43hc72bb7e_1006
    - r-nlme 3.1_162 r43h61816a4_1
    - r-nloptr 2.0.3 r43hcf54a89_2
    - r-nnet 7.3_19 r43h57805ef_1
    - r-numderiv 2016.8_1.1 r43hc72bb7e_5
    - r-openssl 2.0.6 r43hb353fa6_1
    - r-openxlsx 4.2.5.2 r43ha503ecb_1
    - r-parallelly 1.36.0 r43hc72bb7e_1
    - r-pbkrtest 0.5.2 r43hc72bb7e_1
    - r-pillar 1.9.0 r43hc72bb7e_1
    - r-pkgconfig 2.0.3 r43hc72bb7e_3
    - r-plogr 0.2.0 r43hc72bb7e_1005
    - r-plyr 1.8.8 r43ha503ecb_1
    - r-png 0.1_8 r43h81d01c5_1
    - r-polynom 1.4_1 r43hc72bb7e_2
    - r-prettyunits 1.1.1 r43hc72bb7e_3
    - r-proc 1.18.4 r43ha503ecb_0
    - r-prodlim 2023.03.31 r43ha503ecb_1
    - r-progress 1.2.2 r43hc72bb7e_4
    - r-progressr 0.13.0 r43hc72bb7e_1
    - r-promises 1.2.0.1 r43ha503ecb_2
    - r-proxy 0.4_27 r43h57805ef_2
    - r-pscl 1.5.5.1 r43hd590300_1
    - r-purrr 1.0.1 r43h57805ef_1
    - r-quantreg 5.95 r43hd9ac46e_1
    - r-r6 2.5.1 r43hc72bb7e_2
    - r-rappdirs 0.3.3 r43h57805ef_2
    - r-rcolorbrewer 1.1_3 r43h785f33e_2
    - r-rcpp 1.0.11 r43h7df8631_0
    - r-rcpparmadillo 0.12.4.1.0 r43h08d816e_0
    - r-rcppeigen 0.3.3.9.3 r43h08d816e_1
    - r-rcurl 1.98_1.12 r43hf9611b0_2
    - r-readr 2.1.4 r43ha503ecb_1
    - r-readxl 1.4.3 r43ha5c9fba_0
    - r-recipes 1.0.6 r43hc72bb7e_1
    - r-rematch 1.0.1 r43hc72bb7e_1006
    - r-reshape2 1.4.4 r43ha503ecb_3
    - r-rio 0.5.29 r43hc72bb7e_2
    - r-rlang 1.1.1 r43ha503ecb_1
    - r-rmarkdown 2.23 r43hc72bb7e_0
    - r-rpart 4.1.19 r43h57805ef_1
    - r-rsqlite 2.3.1 r43ha503ecb_1
    - r-rstatix 0.7.2 r43hc72bb7e_1
    - r-sass 0.4.7 r43ha503ecb_0
    - r-scales 1.2.1 r43hc72bb7e_2
    - r-sfsmisc 1.1_15 r43hc72bb7e_1
    - r-shape 1.4.6 r43ha770c72_2
    - r-shiny 1.7.4.1 r43h785f33e_0
    - r-snow 0.4_4 r43hc72bb7e_2
    - r-sourcetools 0.1.7_1 r43ha503ecb_1
    - r-sp 1.6_1 r43h57805ef_1
    - r-sparsem 1.81 r43h61816a4_2
    - r-squarem 2021.1 r43hc72bb7e_2
    - r-statmod 1.5.0 r43hd8f1df9_1
    - r-stringi 1.7.12 r43hc0c3e09_2
    - r-stringr 1.5.0 r43h785f33e_1
    - r-survival 3.5_5 r43h57805ef_1
    - r-sys 3.4.2 r43h57805ef_1
    - r-tibble 3.2.1 r43h57805ef_2
    - r-tidyr 1.3.0 r43ha503ecb_1
    - r-tidyselect 1.2.0 r43hc72bb7e_1
    - r-timechange 0.2.0 r43ha503ecb_1
    - r-timedate 4022.108 r43hc72bb7e_1
    - r-tinytex 0.45 r43hc72bb7e_1
    - r-tzdb 0.4.0 r43ha503ecb_1
    - r-utf8 1.2.3 r43h57805ef_1
    - r-vctrs 0.6.3 r43ha503ecb_0
    - r-viridislite 0.4.2 r43hc72bb7e_1
    - r-vroom 1.6.3 r43ha503ecb_1
    - r-wheatmap 0.2.0 r43hc72bb7e_2
    - r-withr 2.5.0 r43hc72bb7e_2
    - r-xfun 0.39 r43ha503ecb_1
    - r-xtable 1.8_4 r43hc72bb7e_5
    - r-yaml 2.3.7 r43h57805ef_1
    - r-zip 2.3.0 r43h57805ef_1
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - setuptools 68.0.0 pyhd8ed1ab_0
    - sysroot_linux-64 2.12 he073ed8_16
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - toml 0.10.2 pyhd8ed1ab_0
    - tomlkit 0.11.8 pyha770c72_0
    - tzdata 2023c h71feb2d_0
    - wheel 0.40.0 pyhd8ed1ab_1
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.8.6 h8ee46fc_0
    - xorg-libxau 1.0.11 hd590300_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.11 hd590300_0
    - xorg-libxt 1.3.0 hd590300_0
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - yaml 0.2.5 h7f98852_2
    - yq 3.2.2 pyhd8ed1ab_0
    - zlib 1.2.13 hd590300_5
    - zstd 1.5.2 hfc55251_7
  run:
    - bioconductor-annotationhub >=3.8.0,<3.9.0
    - bioconductor-delayedarray >=0.26.0,<0.27.0
    - bioconductor-experimenthub >=2.8.0,<2.9.0
    - bioconductor-genomicranges >=1.52.0,<1.53.0
    - bioconductor-iranges >=2.34.0,<2.35.0
    - bioconductor-s4vectors >=0.38.0,<0.39.0
    - bioconductor-sesame >=1.18.0,<1.19.0
    - bioconductor-sesamedata >=1.18.0,<1.19.0
    - bioconductor-summarizedexperiment >=1.30.0,<1.31.0
    - r-base >=4.3,<4.4.0a0
    - r-dplyr
    - r-ggplot2
    - r-ggpubr
    - r-mass
    - r-matrix
    - r-plyr
    - r-progress
    - r-pscl
    - r-readr
    - r-rlang
    - r-sfsmisc
    - r-stringr
    - r-tibble
    - r-tidyr
test:
  commands:
    - $R -e "library('MethReg')"
about:
  description: Epigenome-wide association studies (EWAS) detects a large number of
    DNA methylation differences, often hundreds of differentially methylated regions
    and thousands of CpGs, that are significantly associated with a disease, many
    are located in non-coding regions. Therefore, there is a critical need to better
    understand the functional impact of these CpG methylations and to further prioritize
    the significant changes. MethReg is an R package for integrative modeling of DNA
    methylation, target gene expression and transcription factor binding sites data,
    to systematically identify and rank functional CpG methylations. MethReg evaluates,
    prioritizes and annotates CpG sites with high regulatory potential using matched
    methylation and gene expression data, along with external TF-target interaction
    databases based on manually curation, ChIP-seq experiments or gene regulatory
    network analysis.
  home: https://bioconductor.org/packages/3.17/bioc/html/MethReg.html
  license: GPL-3
  license_file: /opt/conda/conda-bld/bioconductor-methreg_1689617053159/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/share/licenses/GPL-3
  summary: Assessing the regulatory potential of DNA methylation regions or sites
    on gene transcription
extra:
  copy_test_source_files: true
  final: true
