# R Interface to the metaviz web app for interactive metagenomics data analysis and visualization

## Documentation for package ‘metavizr’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

buildMetavizGraph | Build a MetavizTree object from another object
buildMetavizGraph-method | Build a MetavizTree object from another object
buildMetavizGraphInnerNodes | Build a MetavizTree object from another object
buildMetavizGraphInnerNodes-method | Build a MetavizTree object from another object
EpivizMetagenomicsData | Data container for MRexperiment objects
EpivizMetagenomicsData-class | Data container for MRexperiment objects
EpivizMetagenomicsDataInnerNodes | Data container for MRexperiment objects
EpivizMetagenomicsDataInnerNodes-class | Data container for MRexperiment objects
EpivizMetagenomicsDataTimeSeries | Data container for MRexperiment objects
EpivizMetagenomicsDataTimeSeries-class | Data container for MRexperiment objects
generateSelection | Method to select and set aggregation type to nodes in FacetZoom
MetavizApp | Class managing connection to metaviz application.
MetavizApp-class | Class managing connection to metaviz application.
metavizControl | metavizr settings
MetavizGraph | Graph implementation to query hierarchical feature data
MetavizGraph-class | Graph implementation to query hierarchical feature data
MetavizGraphInnerNodes | Graph implementation to query hierarchical feature data
MetavizGraphInnerNodes-class | Graph implementation to query hierarchical feature data
register-method | Generic method to register data to the epiviz data server
register-method | Generic method to register data to the epiviz data server
replaceNAFeatures | Method to replace NA or null feature labels with Not_Annotated_hierarchy-level
setMetavizStandalone | set metaviz app standalone settings
startMetaviz | Start metaviz app and create 'MetavizApp' object to manage connection.
startMetavizStandalone | Start metaviz app in standalone (locally) and create 'MetavizApp' object to manage connection.
validateObject | validate 'MRexperiment-class' object