{% set version = "1.0.11" %}
{% set name = "metaseqR2" %}
{% set bioc = "3.11" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: be85c10c68368ed64d84546b309aeb80
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: BiocGenerics, BiocManager, BSgenome, knitr, RMySQL, RUnit
requirements:
  host:
    - 'bioconductor-absseq >=1.42.0,<1.43.0'
    - 'bioconductor-bayseq >=2.22.0,<2.23.0'
    - 'bioconductor-biobase >=2.48.0,<2.49.0'
    - 'bioconductor-biocparallel >=1.22.0,<1.23.0'
    - 'bioconductor-biomart >=2.44.0,<2.45.0'
    - 'bioconductor-biostrings >=2.56.0,<2.57.0'
    - 'bioconductor-deseq >=1.39.0,<1.40.0'
    - 'bioconductor-deseq2 >=1.28.0,<1.29.0'
    - 'bioconductor-dss >=2.36.0,<2.37.0'
    - 'bioconductor-edaseq >=2.22.0,<2.23.0'
    - 'bioconductor-edger >=3.30.0,<3.31.0'
    - 'bioconductor-genomeinfodb >=1.24.0,<1.25.0'
    - 'bioconductor-genomicalignments >=1.24.0,<1.25.0'
    - 'bioconductor-genomicfeatures >=1.40.0,<1.41.0'
    - 'bioconductor-genomicranges >=1.40.0,<1.41.0'
    - 'bioconductor-iranges >=2.22.0,<2.23.0'
    - 'bioconductor-limma >=3.44.0,<3.45.0'
    - 'bioconductor-noiseq >=2.31.0,<2.32.0'
    - 'bioconductor-qvalue >=2.20.0,<2.21.0'
    - 'bioconductor-rsamtools >=2.4.0,<2.5.0'
    - 'bioconductor-rtracklayer >=1.48.0,<1.49.0'
    - 'bioconductor-s4vectors >=0.26.0,<0.27.0'
    - 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
    - 'bioconductor-survcomp >=1.38.0,<1.39.0'
    - 'bioconductor-vsn >=3.56.0,<3.57.0'
    - r-base
    - r-corrplot
    - r-dt
    - r-gplots
    - r-heatmaply
    - r-htmltools
    - r-httr
    - r-jsonlite
    - r-locfit
    - r-log4r
    - r-magrittr
    - r-nbpseq
    - r-pander
    - r-rmarkdown
    - r-rmdformats
    - r-rsqlite
    - r-stringr
    - r-venndiagram
    - r-zoo
  run:
    - 'bioconductor-absseq >=1.42.0,<1.43.0'
    - 'bioconductor-bayseq >=2.22.0,<2.23.0'
    - 'bioconductor-biobase >=2.48.0,<2.49.0'
    - 'bioconductor-biocparallel >=1.22.0,<1.23.0'
    - 'bioconductor-biomart >=2.44.0,<2.45.0'
    - 'bioconductor-biostrings >=2.56.0,<2.57.0'
    - 'bioconductor-deseq >=1.39.0,<1.40.0'
    - 'bioconductor-deseq2 >=1.28.0,<1.29.0'
    - 'bioconductor-dss >=2.36.0,<2.37.0'
    - 'bioconductor-edaseq >=2.22.0,<2.23.0'
    - 'bioconductor-edger >=3.30.0,<3.31.0'
    - 'bioconductor-genomeinfodb >=1.24.0,<1.25.0'
    - 'bioconductor-genomicalignments >=1.24.0,<1.25.0'
    - 'bioconductor-genomicfeatures >=1.40.0,<1.41.0'
    - 'bioconductor-genomicranges >=1.40.0,<1.41.0'
    - 'bioconductor-iranges >=2.22.0,<2.23.0'
    - 'bioconductor-limma >=3.44.0,<3.45.0'
    - 'bioconductor-noiseq >=2.31.0,<2.32.0'
    - 'bioconductor-qvalue >=2.20.0,<2.21.0'
    - 'bioconductor-rsamtools >=2.4.0,<2.5.0'
    - 'bioconductor-rtracklayer >=1.48.0,<1.49.0'
    - 'bioconductor-s4vectors >=0.26.0,<0.27.0'
    - 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
    - 'bioconductor-survcomp >=1.38.0,<1.39.0'
    - 'bioconductor-vsn >=3.56.0,<3.57.0'
    - r-base
    - r-corrplot
    - r-dt
    - r-gplots
    - r-heatmaply
    - r-htmltools
    - r-httr
    - r-jsonlite
    - r-locfit
    - r-log4r
    - r-magrittr
    - r-nbpseq
    - r-pander
    - r-rmarkdown
    - r-rmdformats
    - r-rsqlite
    - r-stringr
    - r-venndiagram
    - r-zoo
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'GPL (>= 3)'
  summary: 'An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms'
  description: 'Provides an interface to several normalization and statistical testing packages for RNA-Seq gene expression data. Additionally, it creates several diagnostic plots, performs meta-analysis by combinining the results of several statistical tests and reports the results in an interactive way.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

