{% set version = "1.36.0" %}
{% set name = "metagenomeSeq" %}
{% set bioc = "3.14" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: f82c1bc269af5315cbf8ca4adc850b87
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: annotate, BiocGenerics, biomformat, knitr, gss, testthat (>= 0.8), vegan, interactiveDisplay, IHW
requirements:
  host:
    - 'bioconductor-biobase >=2.54.0,<2.55.0'
    - 'bioconductor-limma >=3.50.0,<3.51.0'
    - 'bioconductor-wrench >=1.12.0,<1.13.0'
    - r-base
    - r-foreach
    - r-glmnet
    - r-gplots
    - r-matrix
    - r-matrixstats
    - r-rcolorbrewer
  run:
    - 'bioconductor-biobase >=2.54.0,<2.55.0'
    - 'bioconductor-limma >=3.50.0,<3.51.0'
    - 'bioconductor-wrench >=1.12.0,<1.13.0'
    - r-base
    - r-foreach
    - r-glmnet
    - r-gplots
    - r-matrix
    - r-matrixstats
    - r-rcolorbrewer
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: Artistic-2.0
  summary: 'Statistical analysis for sparse high-throughput sequencing'
  description: 'metagenomeSeq is designed to determine features (be it Operational Taxanomic Unit (OTU), species, etc.) that are differentially abundant between two or more groups of multiple samples. metagenomeSeq is designed to address the effects of both normalization and under-sampling of microbial communities on disease association detection and the testing of feature correlations.'
extra:
  identifiers:
    - biotools:metagenomeseq
    - doi:10.1038/nmeth.2658
  parent_recipe:
    name: bioconductor-metagenomeseq
    path: recipes/bioconductor-metagenomeseq
    version: 1.22.0

