Package: metagenomeFeatures
Title: Exploration of marker-gene sequence taxonomic annotations
Version: 2.10.0
Author: Nathan D. Olson, Joseph Nathaniel Paulson, Hector Corrada Bravo
Maintainer: Nathan D. Olson <nolson@umiacs.umd.edu>
Description: metagenomeFeatures was developed for use in exploring
    the taxonomic annotations for a marker-gene metagenomic sequence
    dataset. The package can be used to explore the taxonomic
    composition of a marker-gene database or annotated sequences from a
    marker-gene metagenome experiment.
Depends: R (>= 3.5), Biobase (>= 2.17.8)
License: Artistic-2.0
LazyData: true
Imports: Biostrings (>= 2.36.4), S4Vectors (>= 0.23.18), dplyr (>=
        0.7.0), dbplyr(>= 1.0.0), stringr (>= 1.0.0), lazyeval (>=
        0.1.10), RSQLite (>= 1.0.0), magrittr (>= 1.5), methods (>=
        3.3.1), lattice (>= 0.20.33), ape (>= 3.5), DECIPHER (>= 2.4.0)
Suggests: knitr (>= 1.11), testthat (>= 0.10.0), rmarkdown (>= 1.3),
        devtools (>= 1.13.5), ggtree(>= 1.8.2), BiocStyle (>= 2.8.2),
        phyloseq (>= 1.24.2), forcats (>= 0.3.0), ggplot2 (>= 3.0.0)
Collate: 'utils.R' 'phylo-class.R' 'qiita_study_94_gg_ids.R'
        'DNAStringSetOrNull-class.R' 'mgDb-class.R'
        'mgFeatures-class.R' 'gg13.8_85MgDb.R' 'mgDb-taxa_accessors.R'
        'mgDb_method_select.R' 'mgDb_method_annotateFeatures.R'
        'mock_query_df.R' 'mock_mgF.R'
VignetteBuilder: knitr
URL: https://github.com/HCBravoLab/metagenomeFeatures
BugReports: https://github.com/HCBravoLab/metagenomeFeatures/issues
biocViews: ImmunoOncology, Microbiome, Metagenomics, Annotation,
        Infrastructure, Sequencing, Software
NeedsCompilation: no
RoxygenNote: 7.0.2
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/metagenomeFeatures
git_branch: RELEASE_3_12
git_last_commit: 880eaad
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
Packaged: 2020-10-28 01:30:24 UTC; biocbuild
Built: R 4.0.3; ; 2021-03-29 12:41:15 UTC; unix
