avoid_gaps_update	avoid_gaps_update
Bam_Handler	Bam_Handler
bed_file_filter	bed_file_filter
exon_by_gene_with_observed_transcripts	exon_by_gene_with_observed_transcripts
get_demo_bam_files	get_demo_bam_files
get_demo_design	get_demo_design
get_demo_metagene	get_demo_metagene
get_demo_regions	get_demo_regions
get_promoters_txdb	get_promoters_txdb
metagene	metagene
permutation_test	permutation_test
plot_metagene	plot_metagene
promoters_hg18	promoters_hg18
promoters_hg19	promoters_hg19
promoters_mm10	promoters_mm10
promoters_mm9	promoters_mm9
write_bed_file_filter_result	write_bed_file_filter_result
