Package: metagene
Version: 2.31.0
Date: 2021-11-18
Title: A package to produce metagene plots
Author: Charles Joly Beauparlant 
	<charles.joly-beauparlant@crchul.ulaval.ca>, Fabien Claude Lamaze 
	<fabien.lamaze.1@ulaval.ca>, Rawane Samb <rawane.samb.1@ulaval.ca>, 
        Cedric Lippens <lippens.cedric@protonmail>,
	Astrid Louise Deschenes <Astrid-Louise.Deschenes@crchudequebec.ulaval.ca> 
	and Arnaud Droit <arnaud.droit@crchuq.ulaval.ca>.
Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>
Description: This package produces metagene plots to compare the behavior of
    DNA-interacting proteins at selected groups of genes/features. Bam files
    are used to increase the resolution. Multiple combination of group of bam
    files and/or group of genomic regions can be compared in a single analysis.
    Bootstraping analysis is used to compare the groups and locate regions with
    statistically different enrichment profiles.
biocViews: ChIPSeq, Genetics, MultipleComparison, Coverage, Alignment,
        Sequencing
License: Artistic-2.0 | file LICENSE
LazyData: true
BugReports: https://github.com/CharlesJB/metagene/issues
VignetteBuilder: knitr
Depends: R (>= 3.5.0), R6 (>= 2.0), GenomicRanges, BiocParallel
Imports: rtracklayer, gplots, tools, GenomicAlignments, GenomeInfoDb,
        GenomicFeatures, IRanges, ggplot2, Rsamtools, matrixStats,
        purrr, data.table, magrittr, methods, utils, ensembldb,
        EnsDb.Hsapiens.v86, stringr
Suggests: BiocGenerics, similaRpeak, RUnit, knitr, BiocStyle, rmarkdown
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/metagene
git_branch: master
git_last_commit: 7597c31
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: no
Packaged: 2022-11-01 22:22:31 UTC; biocbuild
Built: R 4.3.1; ; 2023-07-15 01:39:58 UTC; unix
