Package: metagene
Version: 2.18.0
Date: 2017-10-13
Title: A package to produce metagene plots
Author: Charles Joly Beauparlant 
	<charles.joly-beauparlant@crchul.ulaval.ca>, Fabien Claude Lamaze 
	<fabien.lamaze.1@ulaval.ca>, Rawane Samb <rawane.samb.1@ulaval.ca>, 
        Cedric Lippens <lippens.cedric@protonmail>,
	Astrid Louise Deschenes <Astrid-Louise.Deschenes@crchudequebec.ulaval.ca> 
	and Arnaud Droit <arnaud.droit@crchuq.ulaval.ca>.
Author@R: c(person("Charles", "Joly Beauparlant",
        email="charles.joly-beauparlant@crchul.ulaval.ca"),
        person("Fabien Claude", "Lamaze",
        email="fabien.lamaze.1@ulaval.ca"), person("Rawane", "Samb",
        email="rawane.samb.1@ulaval.ca"), person("Cedric", "Lippens",
        email="lippens.cedric@protonmail.com"), person("Astrid
        Louise","Deschenes",
        email="Astrid-Louise.Deschenes@crchudequebec.ulaval.ca"),
        person("Arnaud", "Droit",
        email="arnaud.droit@crchuq.ulaval.ca"))
Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>
Description: This package produces metagene plots to compare the behavior of
    DNA-interacting proteins at selected groups of genes/features. Bam files
    are used to increase the resolution. Multiple combination of group of bam
    files and/or group of genomic regions can be compared in a single analysis.
    Bootstraping analysis is used to compare the groups and locate regions with
    statistically different enrichment profiles.
biocViews: ChIPSeq, Genetics, MultipleComparison, Coverage, Alignment,
        Sequencing
License: Artistic-2.0 | file LICENSE
LazyData: true
BugReports: https://github.com/CharlesJB/metagene/issues
VignetteBuilder: knitr
Depends: R (>= 3.5.0), R6 (>= 2.0), GenomicRanges, BiocParallel
Imports: rtracklayer, gplots, tools, GenomicAlignments, GenomeInfoDb,
        GenomicFeatures, IRanges, ggplot2, muStat, Rsamtools, DBChIP,
        matrixStats, purrr, data.table, magrittr, methods, utils,
        ensembldb, EnsDb.Hsapiens.v86, stringr
Suggests: BiocGenerics, similaRpeak, RUnit, knitr, BiocStyle,
        rmarkdown, similaRpeak
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/metagene
git_branch: RELEASE_3_10
git_last_commit: 161d2cf
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
NeedsCompilation: no
Packaged: 2019-10-30 01:05:27 UTC; biocbuild
Built: R 3.6.1; ; 2019-11-04 19:39:39 UTC; unix
