ccle_2_wide	ccle_2_wide
ccle_crc_5	ccle_crc_5
DEGs_Group	DEGs_Group
DEGs_RP	DEGs_RP
de_analysis	de_analysis
filter_subset_sig	filter_subset_sig
filter_subset_sig,ANY-method	filter_subset_sig
filter_subset_sig,DGEList-method	filter_subset_sig
filter_subset_sig,list-method	filter_subset_sig
get_degs	get_degs
get_degs,DGEList,character,character-method	get_degs
get_degs,ExpressionSet,character,character-method	get_degs
get_degs,Matrix,vector,character-method	get_degs
get_degs,matrix,vector,character-method	get_degs
get_degs,Seurat,character,character-method	get_degs
get_degs,SummarizedExperiment,character,character-method	get_degs
get_de_table	get_de_table
get_de_table,DGEList,character,character-method	get_de_table
get_de_table,ExpressionSet,character,character-method	get_de_table
get_de_table,Matrix,vector,character-method	get_de_table
get_de_table,matrix,vector,character-method	get_de_table
get_de_table,Seurat,character,character-method	get_de_table
get_de_table,SummarizedExperiment,character,character-method	get_de_table
get_gsc_sig	get_gsc_sig
get_gsc_sig,character,character-method	get_gsc_sig
get_gsc_sig,GeneSetCollection,character-method	get_gsc_sig
get_lm_sig	get_lm_sig
get_panglao_sig	get_panglao_sig
gls2gsc	gls2gsc
gls2gsc,list-method	gls2gsc
gls2gsc,vector-method	gls2gsc
gsc_plot	gsc_plot
im_data_6	im_data_6
list_panglao_organs	list_panglao_organs
list_panglao_types	list_panglao_types
lm22	lm22
lm7	lm7
mastR	mastR_Package
mastR_Package	mastR_Package
merge_markers	merge_markers
msigdb_gobp_nk	msigdb_gobp_nk
nk_markers	nk_markers
pca_matrix_plot	pca_matrix_plot
pca_matrix_plot,data.frame-method	pca_matrix_plot
pca_matrix_plot,DGEList-method	pca_matrix_plot
pca_matrix_plot,ExpressionSet-method	pca_matrix_plot
pca_matrix_plot,Matrix-method	pca_matrix_plot
pca_matrix_plot,matrix-method	pca_matrix_plot
pca_matrix_plot,Seurat-method	pca_matrix_plot
pca_matrix_plot,SummarizedExperiment-method	pca_matrix_plot
pca_matrix_plot_init	pca_matrix_plot_init
plotPCAbiplot	plotPCAbiplot
plot_diagnostics	plot_diagnostics
plot_mean_var	plot_mean_var
process_data	process_data
process_data,DGEList,character,character-method	process_data
process_data,ExpressionSet,character,character-method	process_data
process_data,Matrix,vector,character-method	process_data
process_data,matrix,vector,character-method	process_data
process_data,Seurat,character,character-method	process_data
process_data,SummarizedExperiment,character,character-method	process_data
pseudo_samples	pseudo_samples
pseudo_samples,matrix,data.frame-method	pseudo_samples
pseudo_samples,matrix,vector-method	pseudo_samples
pseudo_samples,Seurat,character-method	pseudo_samples
pseudo_samples,SummarizedExperiment,character-method	pseudo_samples
pseudo_sample_list	pseudo_sample_list
remove_bg_exp	remove_bg_exp
remove_bg_exp,ANY,ANY,vector-method	remove_bg_exp
remove_bg_exp,ANY,character,vector-method	remove_bg_exp
remove_bg_exp,ANY,DGEList,vector-method	remove_bg_exp
remove_bg_exp,ANY,ExpressionSet,vector-method	remove_bg_exp
remove_bg_exp,ANY,missing,vector-method	remove_bg_exp
remove_bg_exp,ANY,Seurat,vector-method	remove_bg_exp
remove_bg_exp,ANY,SummarizedExperiment,vector-method	remove_bg_exp
remove_bg_exp,DGEList,matrix,vector-method	remove_bg_exp
remove_bg_exp,matrix,matrix,vector-method	remove_bg_exp
remove_bg_exp_mat	remove_bg_exp_mat
select_sig	select_sig
sig_boxplot	sig_boxplot
sig_boxplot,data.frame,vector,vector,character-method	sig_boxplot
sig_boxplot,DGEList,vector,character,character-method	sig_boxplot
sig_boxplot,ExpressionSet,vector,character,character-method	sig_boxplot
sig_boxplot,list,vector,character,character-method	sig_boxplot
sig_boxplot,Matrix,vector,vector,character-method	sig_boxplot
sig_boxplot,matrix,vector,vector,character-method	sig_boxplot
sig_boxplot,Seurat,vector,character,character-method	sig_boxplot
sig_boxplot,SummarizedExperiment,vector,character,character-method	sig_boxplot
sig_gseaplot	sig_gseaplot
sig_gseaplot,ANY,ANY-method	sig_gseaplot
sig_gseaplot,DGEList,ANY-method	sig_gseaplot
sig_gseaplot,list,ANY-method	sig_gseaplot
sig_gseaplot,MArrayLM,list-method	sig_gseaplot
sig_gseaplot,MArrayLM,vector-method	sig_gseaplot
sig_heatmap	sig_heatmap
sig_heatmap,data.frame,ANY,vector,ANY-method	sig_heatmap
sig_heatmap,DGEList,ANY,character,ANY-method	sig_heatmap
sig_heatmap,ExpressionSet,ANY,character,ANY-method	sig_heatmap
sig_heatmap,list,ANY,character,ANY-method	sig_heatmap
sig_heatmap,Matrix,ANY,vector,ANY-method	sig_heatmap
sig_heatmap,matrix,character,vector,missing-method	sig_heatmap
sig_heatmap,matrix,character,vector,vector-method	sig_heatmap
sig_heatmap,matrix,list,vector,missing-method	sig_heatmap
sig_heatmap,Seurat,ANY,character,ANY-method	sig_heatmap
sig_heatmap,SummarizedExperiment,ANY,character,ANY-method	sig_heatmap
sig_rankdensity_plot	sig_rankdensity_plot
sig_rankdensity_plot,data.frame,vector,vector-method	sig_rankdensity_plot
sig_rankdensity_plot,DGEList,vector,character-method	sig_rankdensity_plot
sig_rankdensity_plot,ExpressionSet,vector,character-method	sig_rankdensity_plot
sig_rankdensity_plot,list,vector,character-method	sig_rankdensity_plot
sig_rankdensity_plot,Matrix,vector,vector-method	sig_rankdensity_plot
sig_rankdensity_plot,matrix,vector,vector-method	sig_rankdensity_plot
sig_rankdensity_plot,Seurat,vector,character-method	sig_rankdensity_plot
sig_rankdensity_plot,SummarizedExperiment,vector,character-method	sig_rankdensity_plot
sig_scatter_plot	sig_scatter_plot
sig_scatter_plot,DGEList,vector,character,character-method	sig_scatter_plot
sig_scatter_plot,ExpressionSet,vector,character,character-method	sig_scatter_plot
sig_scatter_plot,list,vector,character,character-method	sig_scatter_plot
sig_scatter_plot,Matrix,vector,vector,character-method	sig_scatter_plot
sig_scatter_plot,matrix,vector,vector,character-method	sig_scatter_plot
sig_scatter_plot,Seurat,vector,character,character-method	sig_scatter_plot
sig_scatter_plot,SummarizedExperiment,vector,character,character-method	sig_scatter_plot
voom_fit_treat	voom_fit_treat
