Package: MAGeCKFlute
Type: Package
Title: Integrative analysis pipeline for pooled CRISPR functional
        genetic screens
Version: 1.2.3
Date: 2019-2-21
Author: Wubing Zhang, Feizhen Wu, Binbin Wang
Maintainer: Wubing Zhang<Watson5bZhang@gmail.com>
Description: MAGeCKFlute is designed to surporting downstream analysis, utilizing the gene summary data provided through MAGeCK or MAGeCK-VISPR. Quality control, normalization, and screen hit identification for CRISPR screen data are performed in pipeline. Identified hits within the pipeline are categorized based on experimental design, and are subsequently interpreted by functional enrichment analysis.
License: GPL (>=3)
VignetteBuilder: knitr
Depends: R (>= 3.5), ggplot2, stats, grDevices, utils, pathview,
        gridExtra
Suggests: knitr, rmarkdown, BiocStyle, org.Mm.eg.db
Imports: ggExtra, ggsci, ggrepel, clusterProfiler, png, data.table,
        pheatmap, sva, DOSE, biomaRt, grid, bladderbatch
LazyData: TRUE
NeedsCompilation: no
biocViews: Software, FunctionalGenomics, CRISPR, ImmunoOncology,
        BatchEffect, QualityControl, Normalization, GeneSetEnrichment,
        Pathways, Visualization
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/MAGeCKFlute
git_branch: RELEASE_3_8
git_last_commit: 0df39fe
git_last_commit_date: 2019-02-21
Date/Publication: 2019-02-21
Packaged: 2019-02-22 02:54:42 UTC; biocbuild
Built: R 3.5.1; ; 2019-03-12 13:53:59 UTC; unix
