# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Nov  9 19:36:46 2021
# ------------------------------------------------

package:
  name: bioconductor-madseq
  version: 1.20.0
source:
  md5: 49c975fd97fab13c38036b35ed50fcb4
  url:
    - https://bioarchive.galaxyproject.org/MADSEQ_1.20.0.tar.gz
    - https://bioconductor.org/packages/3.14/bioc/src/contrib/MADSEQ_1.20.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-madseq/bioconductor-madseq_1.20.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
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    - bioconductor-biocfilecache 2.2.0 r41hdfd78af_0
    - bioconductor-biocgenerics 0.40.0 r41hdfd78af_0
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    - bioconductor-rhtslib 1.26.0 r41hd029910_0
    - bioconductor-rsamtools 2.10.0 r41h399db7b_0
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    - bioconductor-s4vectors 0.32.0 r41hd029910_0
    - bioconductor-summarizedexperiment 1.24.0 r41hdfd78af_0
    - bioconductor-variantannotation 1.40.0 r41hd029910_0
    - bioconductor-xvector 0.34.0 r41hd029910_0
    - bioconductor-zlibbioc 1.40.0 r41hd029910_0
    - bwidget 1.9.14 ha770c72_1
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    - r-lifecycle 1.0.1 r41hc72bb7e_0
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    - r-memoise 2.0.0 r41hc72bb7e_0
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    - r-vcfr 1.12.0 r41h8380222_0
    - r-vctrs 0.3.8 r41hcfec24a_1
    - r-vegan 2.5_7 r41h52d45c5_0
    - r-vgam 1.1_5 r41h859d828_0
    - r-viridislite 0.4.0 r41hc72bb7e_0
    - r-withr 2.4.2 r41hc72bb7e_0
    - r-xml 3.99_0.8 r41hcfec24a_0
    - r-xml2 1.3.2 r41h03ef668_1
    - r-yaml 2.2.1 r41hcfec24a_1
    - readline 8.1 h46c0cb4_0
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.11 h27826a3_1
    - tktable 2.10 hb7b940f_3
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    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.2 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
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    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h36c2ea0_1013
    - zstd 1.5.0 ha95c52a_0
  run:
    - bioconductor-biostrings >=2.62.0,<2.63.0
    - bioconductor-bsgenome >=1.62.0,<1.63.0
    - bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0
    - bioconductor-genomeinfodb >=1.30.0,<1.31.0
    - bioconductor-genomicalignments >=1.30.0,<1.31.0
    - bioconductor-genomicranges >=1.46.0,<1.47.0
    - bioconductor-iranges >=2.28.0,<2.29.0
    - bioconductor-preprocesscore >=1.56.0,<1.57.0
    - bioconductor-rsamtools >=2.10.0,<2.11.0
    - bioconductor-rtracklayer >=1.54.0,<1.55.0
    - bioconductor-s4vectors >=0.32.0,<0.33.0
    - bioconductor-summarizedexperiment >=1.24.0,<1.25.0
    - bioconductor-variantannotation >=1.40.0,<1.41.0
    - bioconductor-zlibbioc >=1.40.0,<1.41.0
    - r-base >=4.1,<4.2.0a0
    - r-coda
    - r-rjags >=4-6
    - r-vcfr
    - r-vgam
test:
  commands:
    - $R -e "library('MADSEQ')"
about:
  description: The MADSEQ package provides a group of hierarchical Bayeisan models
    for the detection of mosaic aneuploidy, the inference of the type of aneuploidy
    and also for the quantification of the fraction of aneuploid cells in the sample.
  home: https://bioconductor.org/packages/3.14/bioc/html/MADSEQ.html
  license: GPL(>=2)
  license_file: /opt/conda/conda-bld/bioconductor-madseq_1636493361290/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/share/licenses/GPL-3
  summary: Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing
    Data
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:madseq
    - doi:10.1101/142299
