# Differential cell type change analysis using Logistic/linear Regression

## Documentation for package ‘LRcell’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

enrich_posfrac_score | Calculate enrichment scores for each cell type in a specific gene.
example_gene_pvals | Example gene_pvals named vector from mouse experiment.
example_LRcell_res | An example output of LRcell using data example_gene_pvals and mouse_FC_marker_genes.
get_markergenes | Get top marker genes for each subcluster
LRcell | Cell-type enrichment analysis for preranked gene set.
LRcellCore | Find most enriched cell types in bulk DE genes by Logistic Regression
LRcell_gene_enriched_scores | Find most enriched cell types in bulk DE genes by Logistic Regression
mouse_celltypes | Mapping between subclusters and cell types in Mouse Brain
mouse_FC_marker_genes | Example marker genes from mouse FC brain region.
plot_manhattan_enrich | Manhattan plot for the enrichment of cell types
plot_marker_dist | Plot marker genes distribution on DE gene rank