KEGG_lincs              Combines all other package functions for
                        one-step pathway visualization
KEGGlincs               KEGGlincs: an R package designed to explore the
                        edges in KEGG pathways
KL_compare              Combines all other package functions for
                        one-step cell line comparison
add_edge_data           Annotate KEGG edge mappings with user data
cyto_vis                Send graph to Cytoscape via CyREST
edge_mapping_info       Prepare edges for mapping
expand_KEGG_edges       Get detailed KEGG mapping information for each
                        relation [edge] documented in KEGG
expand_KEGG_mappings    Get detailed KEGG mapping information for each
                        map entity
generate_mappings       The 'boilerplate' for this package's desired
                        graph style
get_KGML                Download and parse KGML file
get_fisher_info         Perform Fisher's Exact test for edges in
                        pathway
get_graph_object        Generate graph object from nodes and edges
keggerize_edges         Add in edges to map documented in other
                        pathways
node_mapping_info       Prepare nodes for mapping
overlap_info            Get overlap information for pairs of gene
                        knock-outs from LINCS data
path_genes_by_cell_type
                        See how many pathway gene knock-outs are
                        available from data
refine_mappings         Refine pathway by cell type
tidy_edge               Tidy up pathway by combining edges inside of
                        edge_mapping_info
toCytoscape             cyREST utility functions
