# Detection, Characterization and Visualization of Kataegis in Sequencing Data

## Documentation for package ‘katdetectr’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

constructKatdetect | constructKatdetect
detectKataegis | detectKataegis
generateSyntheticData | Generate genomic variants with pre-defined kataegis foci.
getGenomicVariants | Retrieve genomic variants from KatDetect object.
getGenomicVariants-method | Retrieve genomic variants from KatDetect object.
getInfo | Retrieve model parameters from a KatDetect object.
getInfo-method | Retrieve model parameters from a KatDetect object.
getKataegisFoci | Retrieve kateagis foci from a KatDetect object.
getKataegisFoci-method | Retrieve kateagis foci from a KatDetect object.
getSegments | Retrieve segments from KatDetect a object.
getSegments-method | Retrieve segments from KatDetect a object.
KatDetect-class | KatDetect-class: KatDetect objects
katdetectr | Katdetectr: A package for kataegis detection, characterization and visualization
rainfallPlot | Rainfall plot.