# Generated by roxygen2: do not edit by hand

export(IsomirDataSeqFromFiles)
export(IsomirDataSeqFromMirtop)
export(IsomirDataSeqFromRawData)
export(findTargets)
export(isoAnnotate)
export(isoCounts)
export(isoDE)
export(isoNetwork)
export(isoNorm)
export(isoPLSDA)
export(isoPLSDAplot)
export(isoPlot)
export(isoPlotNet)
export(isoPlotPosition)
export(isoTop)
export(mirna2targetscan)
export(updateIsomirDataSeq)
exportClasses("IsomirDataSeq")
exportMethods("counts")
exportMethods("counts<-")
exportMethods("design")
exportMethods("design<-")
exportMethods("isoSelect")
import(Biobase)
import(BiocGenerics)
import(DESeq2)
import(GGally)
import(GenomicRanges)
import(IRanges)
import(S4Vectors)
import(SummarizedExperiment)
import(assertive.sets)
import(cluster)
import(gtools)
import(methods)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,mget)
importFrom(AnnotationDbi,revmap)
importFrom(DEGreport,degPCA)
importFrom(DEGreport,degPatterns)
importFrom(DiscriMiner,plsDA)
importFrom(RColorBrewer,brewer.pal)
importFrom(broom,tidy)
importFrom(cowplot,plot_grid)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,funs)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_all)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_polar)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_polygon)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,ggplot_gtable)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_brewer)
importFrom(ggplot2,scale_colour_brewer)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,stat_smooth)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(gplots,heatmap.2)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,pairs)
importFrom(grid,textGrob)
importFrom(grid,unit)
importFrom(grid,unit.pmax)
importFrom(gridExtra,arrangeGrob)
importFrom(gridExtra,grid.arrange)
importFrom(limma,voom)
importFrom(readr,read_tsv)
importFrom(reshape,melt)
importFrom(reshape,melt.array)
importFrom(reshape,melt.data.frame)
importFrom(reshape,melt.list)
importFrom(rlang,sym)
importFrom(stats,as.dist)
importFrom(stats,as.hclust)
importFrom(stats,cutree)
importFrom(stats,deviance)
importFrom(stats,dist)
importFrom(stats,dnorm)
importFrom(stats,hclust)
importFrom(stats,model.matrix)
importFrom(stats,nlminb)
importFrom(stats,p.adjust)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,prop.test)
importFrom(stats,qnorm)
importFrom(stats,rnorm)
importFrom(stringr,str_count)
importFrom(stringr,str_extract)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,gather)
importFrom(tidyr,separate)
importFrom(tidyr,separate_rows)
importFrom(tidyr,spread)
importFrom(tidyr,unite)
importFrom(tidyr,unnest)
