IsomirDataSeq-class     Class that contains all isomiRs annotation for
                        all samples
IsomirDataSeqFromFiles
                        Loads miRNA annotation from seqbuster tool or
                        pre-processed data.
IsomirDataSeqFromMirtop
                        Import 'mirtop' output into 'IsomirDataSeq'
IsomirDataSeqFromRawData
                        Loads miRNA annotation from seqbuster tool or
                        pre-processed data.
counts                  Accessors for the count matrix of a
                        IsomirDataSeq object.
dat286.long             Data frame containing mirna from Argyropoulos's
                        paper
design                  Accessors for the 'design' slot of a
                        IsomirDataSeq object.
ego                     enrichResult class
findTargets             Find miRNAs target using mRNA/miRNA expression
gene_ex_rse             Data frame containing gene expression data
isoAnnotate             Annotate the rawData of the IsomirDataSeq
                        object
isoCounts               Create count matrix with different summarizing
                        options
isoDE                   Differential expression analysis with DESeq2
isoNetwork              Clustering miRNAs-genes pairs in similar
                        pattern expression
isoNorm                 Normalize count matrix
isoPLSDA                Partial Least Squares Discriminant Analysis for
                        'IsomirDataSeq'
isoPLSDAplot            Plot components from isoPLSDA analysis (pairs
                        plot)
isoPlot                 Plot the amount of isomiRs in different samples
isoPlotNet              Functional miRNA / gene expression profile plot
isoPlotPosition         Plot nucleotides changes at a given position
isoSelect               Method to select specific miRNAs from an
                        IsomirDataSeq object.
isoTop                  Heatmap of the top expressed isomiRs
isomiRs-package         isomiRs
ma_ex                   Data frame containing gene-mirna relationship
mirData                 Example of IsomirDataSeq with human brain miRNA
                        counts data
mirTritation            Data frame containing mirna from Argyropoulos's
                        paper
mirna2targetscan        Find targets in targetscan database
mirna_ex_rse            Data frame containing mirna expression data
updateIsomirDataSeq     Update IsomirDataSeq object from version < 1.7
