[DEFAULT]
minScore=5
maxPvalue=1.0e-3
defaultSaveScore=1.0e+100
saveScore=1.0e+100
specialModifScore=1.0e+100
basicModifList=Cys_CAM,Oxidation_M,iTRAQ4plex_K,iTRAQ4plex_Nterm,iTRAQ8plex_K,iTRAQ8plex_Nterm
minSeqCovSPH=0.05
minProtScore=7.0
minNumPept=2
minLen=6
minBigRed=0

[CID]
outputScore=3.5
minScore=4.5
maxPvalue=0.001
minNumPept=2
minProtScore=6
minLen=6
saveScore=6
minSeqCovSPH=0.05

[CID_SENSITIVE]
outputScore=3.5
minScore=4.2
maxPvalue=0.001
minNumPept=2
minProtScore=4.75
minLen=6
saveScore=4.75
minSeqCovSPH=0.0
specialModifScore=4.75

[CID_SENSITIVE_ZH]
outputScore=3.5
minScore=4.5
maxPvalue=0.001
minNumPept=2
minProtScore=5.5
minLen=6
saveScore=5.5
minSeqCovSPH=0.0

[HCD]
outputScore=3.5
minScore=5.5
maxPvalue=0.001
minNumPept=2
minProtScore=9.5
minLen=6
saveScore=9.5
minSeqCovSPH=0.0
basicModifList=Cys_CAM,Oxidation_M,iTRAQ4plex_K,iTRAQ4plex_Nterm,iTRAQ8plex_K,iTRAQ8plex_Nterm
specialModifScore=9.5

[QTOF]
outputScore=3.5
minScore=3.5
maxPvalue=0.00001
minNumPept=2
minProtScore=6.5
minLen=6
saveScore=6.5
minSeqCovSPH=0.0

[QTOF_SENSITIVE]
outputScore=3.2
minScore=3.5
maxPvalue=0.001
minNumPept=2
minProtScore=5.5
minLen=6
saveScore=5.5
minSeqCovSPH=0.0
specialModifScore=5.5

