iSEEde-package	iSEEde-pkg
.cacheCommonInfo,DETable-method	DETable-class
.cacheCommonInfo,LogFCLogFCPlot-method	LogFCLogFCPlot-class
.cacheCommonInfo,MAPlot-method	MAPlot-class
.cacheCommonInfo,VolcanoPlot-method	VolcanoPlot-class
.createObservers,DETable-method	DETable-class
.createObservers,LogFCLogFCPlot-method	LogFCLogFCPlot-class
.createObservers,MAPlot-method	MAPlot-class
.createObservers,VolcanoPlot-method	VolcanoPlot-class
.defineDataInterface,DETable-method	DETable-class
.defineDataInterface,LogFCLogFCPlot-method	LogFCLogFCPlot-class
.defineDataInterface,MAPlot-method	MAPlot-class
.defineDataInterface,VolcanoPlot-method	VolcanoPlot-class
.fullName,DETable-method	DETable-class
.fullName,LogFCLogFCPlot-method	LogFCLogFCPlot-class
.fullName,MAPlot-method	MAPlot-class
.fullName,VolcanoPlot-method	VolcanoPlot-class
.generateDotPlotData,LogFCLogFCPlot-method	LogFCLogFCPlot-class
.generateDotPlotData,MAPlot-method	MAPlot-class
.generateDotPlotData,VolcanoPlot-method	VolcanoPlot-class
.generateTable,DETable-method	DETable-class
.panelColor,DETable-method	DETable-class
.panelColor,LogFCLogFCPlot-method	LogFCLogFCPlot-class
.panelColor,MAPlot-method	MAPlot-class
.panelColor,VolcanoPlot-method	VolcanoPlot-class
.refineParameters,DETable-method	DETable-class
.refineParameters,LogFCLogFCPlot-method	LogFCLogFCPlot-class
.refineParameters,MAPlot-method	MAPlot-class
.refineParameters,VolcanoPlot-method	VolcanoPlot-class
averageLog2	de-generics
averageLog2,iSEEDESeq2Results-method	iSEEDESeq2Results-class
averageLog2,iSEEedgeRResults-method	iSEEedgeRResults-class
averageLog2,iSEELimmaResults-method	iSEELimmaResults-class
contrastResults	contrastResults
contrastResultsNames	contrastResults
de-generics	de-generics
DETable	DETable-class
DETable-class	DETable-class
embedContrastResults	utils-SummarizedExperiment
embedContrastResults,ANY-method	utils-SummarizedExperiment
embedContrastResults,data.frame-method	utils-SummarizedExperiment
embedContrastResults,DESeqResults-method	iSEEDESeq2Results-class
embedContrastResults,iSEEDESeq2Results-method	iSEEDESeq2Results-class
embedContrastResults,iSEEedgeRResults-method	iSEEedgeRResults-class
embedContrastResults,iSEELimmaResults-method	iSEELimmaResults-class
embedContrastResults,TopTags-method	iSEEedgeRResults-class
embedContrastResultsMethods	utils-SummarizedExperiment
initialize,DETable-method	DETable-class
initialize,LogFCLogFCPlot-method	LogFCLogFCPlot-class
initialize,MAPlot-method	MAPlot-class
initialize,VolcanoPlot-method	VolcanoPlot-class
iSEEde	iSEEde-pkg
iSEEDESeq2Results	iSEEDESeq2Results-class
iSEEDESeq2Results-class	iSEEDESeq2Results-class
iSEEedgeRResults	iSEEedgeRResults-class
iSEEedgeRResults-class	iSEEedgeRResults-class
iSEELimmaResults	iSEELimmaResults-class
iSEELimmaResults-class	iSEELimmaResults-class
log2FoldChange	de-generics
log2FoldChange,iSEEDESeq2Results-method	iSEEDESeq2Results-class
log2FoldChange,iSEEedgeRResults-method	iSEEedgeRResults-class
log2FoldChange,iSEELimmaResults-method	iSEELimmaResults-class
LogFCLogFCPlot	LogFCLogFCPlot-class
LogFCLogFCPlot-class	LogFCLogFCPlot-class
MAPlot	MAPlot-class
MAPlot-class	MAPlot-class
pValue	de-generics
pValue,iSEEDESeq2Results-method	iSEEDESeq2Results-class
pValue,iSEEedgeRResults-method	iSEEedgeRResults-class
pValue,iSEELimmaResults-method	iSEELimmaResults-class
showAsCell,iSEEDESeq2Results-method	iSEEDESeq2Results-class
showAsCell,iSEEedgeRResults-method	iSEEedgeRResults-class
showAsCell,iSEELimmaResults-method	iSEELimmaResults-class
utils-SummarizedExperiment	utils-SummarizedExperiment
VolcanoPlot	VolcanoPlot-class
VolcanoPlot-class	VolcanoPlot-class
