InterMineR-class        InterMineR class contains the input values for
                        performing queries in an InterMine instance.
InterMineR-methods      Methods for accessing 'InterMineR-class'
                        objects.
InterMineR-package      R Interface with InterMine-powered databases
PL_DiabetesGenes        PL_DiabetesGenes data
PL_FlyTF_site_specific_TFs
                        PL_FlyTF_site_specific_TFs data
convertToGRanges        Convert InterMineR retrieved genomic
                        information to objects of class 'GRanges'
convertToGeneAnswers    Convert InterMineR enrichment analysis results
                        to GeneAnswers object
convertToRangedSummarizedExperiment
                        Convert experimental results retrieved by
                        InterMineR queries to an object of the
                        'RangedSummarizedExperiment' class
doEnrichment            Perform enrichment analysis
getDatasets             Retrieve information about the available
                        datasets of a Mine instance.
getGeneIds              Get Gene.id values for a list of gene
                        identifiers
getModel                Get the model of InterMine
getRelease              Get the current release information of
                        InterMine
getTemplateQuery        Get the query contained in a template
getTemplates            Get the information (name and title) of the
                        templates pre-defined in InterMine
getVersion              Get the version information of InterMine
getWidgets              Get the widgets of InterMine
initInterMine           Initialize the list containing the base URL and
                        API token.
listDatasets            Retrieve all types of InterMine features that
                        possess dataSets as a child_name.
listMines               List the available InterMine-powered databases
newQuery                Initialize a new list query
runQuery                Run InterMineR queries
setConstraints          setConstraints function is used to create a new
                        or modify an existing list of constraints
setQuery                Initialize a new InterMineR query or modify an
                        existing list query
simplifyResult          Convert multiple values of a column into
                        Comma-separated character strings
summary                 Summarize InterMineR query constraints
