{% set version = "1.8.0" %}
{% set name = "IntEREst" %}
{% set bioc = "3.9" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 9b3f4c58a0efe17843478e5bc800486e
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
  noarch: generic
# Suggests: clinfun, knitr, BSgenome.Hsapiens.UCSC.hg19
requirements:
  host:
    - 'bioconductor-biocgenerics >=0.30.0,<0.31.0'
    - 'bioconductor-biocparallel >=1.18.0,<1.19.0'
    - 'bioconductor-biostrings >=2.52.0,<2.53.0'
    - 'bioconductor-deseq2 >=1.24.0,<1.25.0'
    - 'bioconductor-dexseq >=1.30.0,<1.31.0'
    - 'bioconductor-edger >=3.26.0,<3.27.0'
    - 'bioconductor-genomicalignments >=1.20.0,<1.21.0'
    - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0'
    - 'bioconductor-genomicranges >=1.36.0,<1.37.0'
    - 'bioconductor-iranges >=2.18.0,<2.19.0'
    - 'bioconductor-rsamtools >=2.0.0,<2.1.0'
    - 'bioconductor-s4vectors >=0.22.0,<0.23.0'
    - 'bioconductor-seqlogo >=1.50.0,<1.51.0'
    - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0'
    - r-base
    - r-dbi
    - r-rmysql
    - r-seqinr
  run:
    - 'bioconductor-biocgenerics >=0.30.0,<0.31.0'
    - 'bioconductor-biocparallel >=1.18.0,<1.19.0'
    - 'bioconductor-biostrings >=2.52.0,<2.53.0'
    - 'bioconductor-deseq2 >=1.24.0,<1.25.0'
    - 'bioconductor-dexseq >=1.30.0,<1.31.0'
    - 'bioconductor-edger >=3.26.0,<3.27.0'
    - 'bioconductor-genomicalignments >=1.20.0,<1.21.0'
    - 'bioconductor-genomicfeatures >=1.36.0,<1.37.0'
    - 'bioconductor-genomicranges >=1.36.0,<1.37.0'
    - 'bioconductor-iranges >=2.18.0,<2.19.0'
    - 'bioconductor-rsamtools >=2.0.0,<2.1.0'
    - 'bioconductor-s4vectors >=0.22.0,<0.23.0'
    - 'bioconductor-seqlogo >=1.50.0,<1.51.0'
    - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0'
    - r-base
    - r-dbi
    - r-rmysql
    - r-seqinr
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: GPL-2
  summary: 'This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).'
extra:
  identifiers:
    - doi:10.18129/B9.bioc.IntEREst
  parent_recipe:
    name: bioconductor-interest
    path: recipes/bioconductor-interest
    version: 1.4.1

