Package: IntEREst
Title: Intron-Exon Retention Estimator
Version: 1.24.0
Date: 2022-05-11
Author: Ali Oghabian <Ali.Oghabian@Helsinki.Fi>, Dario Greco
        <dario.greco@helsinki.fi>, Mikko Frilander
        <Mikko.Frilander@helsinki.fi>
Maintainer: Ali Oghabian <Ali.Oghabian@Helsinki.Fi>, Mikko Frilander
 <Mikko.Frilander@helsinki.fi>
Description: This package performs Intron-Exon Retention analysis on
        RNA-seq data (.bam files).
Depends: R (>= 3.5.0), GenomicRanges, Rsamtools, SummarizedExperiment,
        edgeR, S4Vectors, GenomicFiles
Imports: seqLogo, Biostrings, GenomicFeatures (>= 1.39.4), IRanges,
        seqinr, graphics, grDevices, stats, utils, grid, methods, DBI,
        RMySQL, GenomicAlignments, BiocParallel, BiocGenerics, DEXSeq,
        DESeq2
Suggests: clinfun, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19
VignetteBuilder: knitr
LazyData: true
biocViews: Software, AlternativeSplicing, Coverage,
        DifferentialSplicing, Sequencing, RNASeq, Alignment,
        Normalization, DifferentialExpression, ImmunoOncology
License: GPL-2
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/IntEREst
git_branch: RELEASE_3_17
git_last_commit: 6d87a26
git_last_commit_date: 2023-04-25
Date/Publication: 2023-04-25
Packaged: 2023-04-25 21:29:33 UTC; biocbuild
Built: R 4.3.1; ; 2023-07-17 18:40:18 UTC; unix
