## ----echo = FALSE-------------------------------------------------------------
library(knitr)
knitr::opts_chunk$set(
    error = FALSE,
    tidy  = FALSE,
    message = FALSE,
    warning = FALSE,
    fig.align = "center"
)

## ----eval = FALSE-------------------------------------------------------------
#  library(ComplexHeatmap)
#  library(InteractiveComplexHeatmap)
#  library(shiny)
#  
#  data(rand_mat) # simply a random matrix
#  ht1 = Heatmap(rand_mat, name = "mat",
#      show_row_names = FALSE, show_column_names = FALSE)
#  ht1 = draw(ht1)
#  
#  ui = fluidPage(
#      h3("My first interactive ComplexHeatmap Shiny app"),
#      p("This is an interactive heatmap visualization on a random matrix."),
#      InteractiveComplexHeatmapOutput()
#  )
#  
#  server = function(input, output, session) {
#      makeInteractiveComplexHeatmap(input, output, session, ht1)
#  }
#  
#  shinyApp(ui, server)

## ----eval = FALSE-------------------------------------------------------------
#  mat2 = matrix(sample(letters[1:10], 100, replace = TRUE), 10)
#  ht2 = draw(Heatmap(mat2, name = "mat2"))
#  
#  ui = fluidPage(
#      h3("The first heatmap"),
#      InteractiveComplexHeatmapOutput("heatmap_1"),
#      hr(),
#      h3("The second heatmap"),
#      InteractiveComplexHeatmapOutput("heatmap_2")
#  )
#  server = function(input, output, session) {
#      makeInteractiveComplexHeatmap(input, output, session, ht1, "heatmap_1")
#      makeInteractiveComplexHeatmap(input, output, session, ht2, "heatmap_2")
#  }
#  shinyApp(ui, server)

## ----eval = FALSE-------------------------------------------------------------
#  ui = tabsetPanel(
#      tabPanel("Numeric", InteractiveComplexHeatmapOutput("heatmap_1")),
#      tabPanel("character", InteractiveComplexHeatmapOutput("heatmap_2"))
#  )
#  server = function(input, output, session) {
#      makeInteractiveComplexHeatmap(input, output, session, ht1, "heatmap_1")
#      makeInteractiveComplexHeatmap(input, output, session, ht2, "heatmap_2")
#  }
#  shinyApp(ui, server)

## ----eval = FALSE-------------------------------------------------------------
#  body = dashboardBody(
#      fluidRow(
#          box(
#              title = "Original heatmap", width = 4, solidHeader = TRUE, status = "primary",
#              originalHeatmapOutput("ht", title = NULL)
#          ),
#          box(
#              title = "Sub-heatmap", width = 4, solidHeader = TRUE, status = "primary",
#              subHeatmapOutput("ht", title = NULL)
#          ),
#          box(
#              title = "Output", width = 4, solidHeader = TRUE, status = "primary",
#              HeatmapInfoOutput("ht", title = NULL)
#          )
#      )
#  )
#  
#  ui = dashboardPage(
#      dashboardHeader(),
#      dashboardSidebar(),
#      body
#  )
#  
#  server = function(input, output, session) {
#      makeInteractiveComplexHeatmap(input, output, session, ht, "ht")
#  }
#  
#  shinyApp(ui, server)

## ----eval = FALSE-------------------------------------------------------------
#  ui = fluidPage(
#      InteractiveComplexHeatmapOutput(output_ui = htmlOutput("info"))
#  )

## ----eval = FALSE-------------------------------------------------------------
#  ui = fluidPage(
#      InteractiveComplexHeatmapOutput(),
#      htmlOutput("info")
#  )

## ----eval = FALSE-------------------------------------------------------------
#  function(df, output) {
#      output[["info"]] = renderUI({  # or output$info = ...
#          if(is.null(df)) { # have not clicked or brushed into the heatmap body
#              ...
#          } else {
#              ...
#          }
#      })
#  }

## ----eval = FALSE-------------------------------------------------------------
#  unique(unlist(df$row_index))
#  unique(unlist(df$column_index))

## ----eval = FALSE-------------------------------------------------------------
#  function(df, input, output, session) {
#      output[["info"]] = renderUI({  # or output$info = ...
#          if(is.null(df)) { # have not clicked into the heatmap body
#              ...
#          } else {
#              ...
#          }
#      })
#  }

## ----eval = FALSE-------------------------------------------------------------
#  library(GetoptLong)  # for the qq() function which does variable intepolation
#  data(rand_mat)
#  ht = Heatmap(rand_mat, show_row_names = FALSE, show_column_names = FALSE)
#  ht = draw(ht)
#  
#  ui = fluidPage(
#      InteractiveComplexHeatmapOutput(output_ui = htmlOutput("info")),
#  )
#  
#  click_action = function(df, output) {
#      output[["info"]] = renderUI({
#          if(!is.null(df)) {
#              HTML(qq("<p style='background-color:#FF8080;color:white;padding:5px;'>You have clicked on heatmap @{df$heatmap}, row @{df$row_index}, column @{df$column_index}</p>"))
#          }
#      })
#  }
#  
#  suppressPackageStartupMessages(library(kableExtra))
#  brush_action = function(df, output) {
#      row_index = unique(unlist(df$row_index))
#      column_index = unique(unlist(df$column_index))
#      output[["info"]] = renderUI({
#          if(!is.null(df)) {
#              HTML(kable_styling(kbl(m[row_index, column_index, drop = FALSE], digits = 2, format = "html"), full_width = FALSE, position = "left"))
#          }
#      })
#  }
#  
#  server = function(input, output, session) {
#      makeInteractiveComplexHeatmap(input, output, session, ht,
#          click_action = click_action, brush_action = brush_action)
#  }
#  
#  shinyApp(ui, server)

## ----eval = FALSE-------------------------------------------------------------
#  InteractiveComplexHeatmapOutput(..., compact = TRUE)

## ----eval = FALSE-------------------------------------------------------------
#  InteractiveComplexHeatmap(..., response = c(action, "brush-output"), output_ui_float = TRUE)

## ----eval = FALSE-------------------------------------------------------------
#  new_output_ui = ...
#  InteractiveComplexHeatmap(..., compact = TRUE, output_ui = new_output_ui)

## ----eval = FALSE-------------------------------------------------------------
#  ui = fluidPage(
#      sliderInput("column", label = "Which column to order?",
#          value = 1, min = 1, max = 10),
#      InteractiveComplexHeatmapOutput()
#  )
#  
#  server = function(input, output, session) {
#      m = matrix(rnorm(100), 10)
#      rownames(m) = 1:10
#      colnames(m) = 1:10
#  
#      observeEvent(input$column, {
#          order = order(m[, input$column])
#          ht = Heatmap(m[order, , drop = FALSE],
#              cluster_rows = FALSE, cluster_columns = FALSE)
#          makeInteractiveComplexHeatmap(input, output, session, ht)
#      })
#  }
#  shiny::shinyApp(ui, server)

## ----eval = FALSE-------------------------------------------------------------
#      ...
#      observeEvent(input$column, {
#          order = order(m[, input$column])
#          ht = Heatmap(m[order, , drop = FALSE],
#              cluster_rows = FALSE, cluster_columns = FALSE)
#          makeInteractiveComplexHeatmap(input, output, session, ht)
#      })
#      ...

## ----eval = FALSE-------------------------------------------------------------
#  click_action = function(df, input, output, session) {
#      obs = observeEvent(input$foo, {
#          ...
#      })
#      record_observation(obs)
#  }

## ----eval = FALSE-------------------------------------------------------------
#  ui = fluidPage(
#      actionButton("show_heatmap", "Generate_heatmap"),
#  )
#  
#  server = function(input, output, session) {
#      m = matrix(rnorm(100), 10)
#      ht = Heatmap(m)
#  
#      observeEvent(input$show_heatmap, {
#          InteractiveComplexHeatmapModal(input, output, session, ht)
#      })
#  }
#  shiny::shinyApp(ui, server)

## ----eval = FALSE-------------------------------------------------------------
#  ui = fluidPage(
#      radioButtons("select", "Select", c("Numeric" = 1, "Character" = 2)),
#      actionButton("show_heatmap", "Generate_heatmap"),
#  )
#  
#  get_heatmap_fun = function(i) {
#      mat_list = list(
#          matrix(rnorm(100), 10),
#          matrix(sample(letters[1:10], 100, replace = TRUE), 10)
#      )
#      Heatmap(mat_list[[i]])
#  }
#  
#  server = function(input, output, session) {
#      observeEvent(input$show_heatmap, {
#          i = as.numeric(input$select)
#          InteractiveComplexHeatmapModal(input, output, session,
#              get_heatmap = get_heatmap_fun(i))
#      })
#  }
#  shiny::shinyApp(ui, server)

## ----eval = FALSE-------------------------------------------------------------
#  ui = fluidPage(
#      actionButton("show_heatmap", "Generate_heatmap"),
#      htmlOutput("heatmap_output")
#  )
#  
#  server = function(input, output, session) {
#      m = matrix(rnorm(100), 10)
#      ht = Heatmap(m)
#  
#      observeEvent(input$show_heatmap, {
#          InteractiveComplexHeatmapWidget(input, output, session, ht, output_id = "heatmap_output")
#      })
#  }
#  shiny::shinyApp(ui, server)

## ----eval = FALSE-------------------------------------------------------------
#  ui = fluidPage(
#      actionButton("show_heatmap", "Generate_heatmap"),
#      htmlOutput("heatmap_output")
#  )
#  
#  server = function(input, output, session) {
#      m = matrix(rnorm(100), 10)
#      ht = Heatmap(m)
#  
#      observeEvent(input$show_heatmap1, {
#          InteractiveComplexHeatmapWidget(input, output, session, ht,
#              output_id = "heatmap_output", close_button = FALSE,
#  
#              js_code = "
#                  $('#show_heatmap').click(function() {
#                      $('#heatmap_output').toggle('slow');
#                  }).text('Show/hide heatmap').
#                     attr('id', 'show_heatmap_toggle');
#              "
#          )
#      })
#  }
#  shiny::shinyApp(ui, server)

## ----eval = FALSE-------------------------------------------------------------
#  ui = fluidPage(
#      actionButton("action", "Generate heatmap"),
#      plotOutput("heatmap", width = 500, height = 500, click = "heatmap_click",
#          brush = "heatmap_brush"),
#      verbatimTextOutput("output")
#  )
#  server = function(input, output, session) {
#  
#      ht_obj = reactiveVal(NULL)
#      ht_pos_obj = reactiveVal(NULL)
#  
#      observeEvent(input$action, {
#          m = matrix(rnorm(100), 10)
#          rownames(m) = 1:10
#          colnames(m) = 1:10
#  
#          output$heatmap = renderPlot({
#              ht = draw(Heatmap(m))
#              ht_pos = htPositionsOnDevice(ht)
#  
#              ht_obj(ht)
#              ht_pos_obj(ht_pos)
#          })
#      })
#  
#      observeEvent(input$heatmap_click, {
#          pos = getPositionFromClick(input$heatmap_click)
#  
#          selection = selectPosition(ht_obj(), pos, mark = FALSE, ht_pos = ht_pos_obj(),
#              verbose = FALSE)
#          output$output = renderPrint({
#              print(selection)
#          })
#      })
#  
#      observeEvent(input$heatmap_brush, {
#          lt = getPositionFromBrush(input$heatmap_brush)
#  
#          selection = selectArea(ht_obj(), lt[[1]], lt[[2]], mark = FALSE, ht_pos = ht_pos_obj(),
#              verbose = FALSE)
#          output$output = renderPrint({
#              print(selection)
#          })
#      })
#  }
#  shinyApp(ui, server)

